View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_127 (Length: 241)
Name: NF19175_low_127
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_127 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 4820789 - 4820593
Alignment:
| Q |
14 |
attattcttaagaattcgtgtaaggagttcgaacgaatttatgacacatgtttaattaatcaaaaagatatactaatattttagtattggtttggagttg |
113 |
Q |
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| T |
4820789 |
attattcttaagaattcgtgtaaggagttcgaacgaatttatgacacatgtttaattaatcaaaaagatatactaatattttagtattggtttggagttg |
4820690 |
T |
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| Q |
114 |
gttaaagttaagctatggtcacatacccattttatattctatttcttacaaaactctccctgtgtaacacggcaggagcatagagaggcataatact |
210 |
Q |
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| T |
4820689 |
gttaaagttaagctatggtcacatacccattttatattctatttcttacaaaactctccctgtgtaacacggcaggagcacagaaaggcataatact |
4820593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 4810769 - 4810719
Alignment:
| Q |
83 |
atactaatattttagtattggtttggagttggttaaagttaagctatggtc |
133 |
Q |
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| T |
4810769 |
atactaatattttattattggtttgaagttggttaaagttaagctaaggtc |
4810719 |
T |
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