View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_128 (Length: 240)
Name: NF19175_low_128
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_128 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 29495661 - 29495438
Alignment:
| Q |
17 |
aaaaacggatgatgtgtnnnnnnntggatgtacataaaacattttttatttacaaatacagcaagaaaacaaaattatcttctacaaatgtgcatctttt |
116 |
Q |
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| T |
29495661 |
aaaaacggatgatgtgtaaaaaaatggatgtacataaaacattttttatttacaaatacagcaagaaaacaaaataatcttctacaaatgtgcatctttt |
29495562 |
T |
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| Q |
117 |
gaggtagcaaagtttctgttttatttactgttgtttcctcacgcacacgaatacacagcacacaattaggtagtgggtacgtggtggccatgagttttgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29495561 |
gaggtagcaaagtttctgttttatttactgttgtttcctcacgcacacgaatacacagcacacaattaggtagtgggtacgtggtggccatgagttttgc |
29495462 |
T |
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| Q |
217 |
ttcctataacttaacatagaatct |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
29495461 |
ttcctataacttaacatagaatct |
29495438 |
T |
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