View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_130 (Length: 239)
Name: NF19175_low_130
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_130 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 51181710 - 51181948
Alignment:
| Q |
1 |
catcatccgaaaagcctaatcccaaccaaaagaaacctatcatggcttctgctgcaattgcatctgcagcagctctagtagcctctcactgcattgagat |
100 |
Q |
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| T |
51181710 |
catcatccgaaaagcctaatcccaaccaaaagaaccctaccatggcttctgctgcaattgcatctgcagcagctctagtagcctctcactgcattgagat |
51181809 |
T |
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| Q |
101 |
tgcagaagatatgggagctgaacaggaccaaatcataactgcagttgactctgctattaatgcaaaaaccaatggagatattatgactctaacagccgga |
200 |
Q |
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| T |
51181810 |
tgcagaagatatgggagctgaacaggaccaaatcataactgcagttgactctgctattaatgcaaaaaccaatggagatattatgactctaacagccgga |
51181909 |
T |
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| Q |
201 |
gcagccacaggtatcagaatctaaagtcgatttattcat |
239 |
Q |
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| T |
51181910 |
gcagccacaggtatcggaatctaaagtcgatttattcat |
51181948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 14180957 - 14180719
Alignment:
| Q |
1 |
catcatccgaaaagcctaatcccaaccaaaagaaacctatcatggcttctgctgcaattgcatctgcagcagctctagtagcctctcactgcattgagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
14180957 |
catcatccgaaaagcctaatcccaaccaaaagaaccctaccatggcttctgctgcaattgcatctgccacagctctagtagcctctcattgcattgagat |
14180858 |
T |
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| Q |
101 |
tgcagaagatatgggagctgaacaggaccaaatcataactgcagttgactctgctattaatgcaaaaaccaatggagatattatgactctaacagccgga |
200 |
Q |
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| T |
14180857 |
tgcagaagatatgggagctgaacaggaccaaatcataacagcagttgactctgctattaatgcaaaaaccaatggagatattatgactctaacagccgga |
14180758 |
T |
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| Q |
201 |
gcagccacaggtatcagaatctaaagtcgatttattcat |
239 |
Q |
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| T |
14180757 |
gcagccacaggtatcagaatttaaagttgatttattcat |
14180719 |
T |
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