View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_139 (Length: 220)
Name: NF19175_low_139
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_139 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 13898290 - 13898478
Alignment:
| Q |
18 |
acatgttccattatgatgtttaagaatgtcagtgatccattcatacaagttggttttgagtcctttgattaaataaggcagcattccgaaaataggccaa |
117 |
Q |
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| T |
13898290 |
acatgttccattatgatgtttaagaatgtcagtgatccattcatacaggttggttttgagtcctttgattaaataaggcagcattccgaaaataggccaa |
13898389 |
T |
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| Q |
118 |
ttgggtaggccacgatgttttttcgatcttaaagaacgaatgaatatgaaaacaatggctgcaataataatctcagtgatttggatatt |
206 |
Q |
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| T |
13898390 |
ttgggtaggccacgatgttttttcgatcttaaagaacgaatgaatatgaaaacaatggctgcaataataatctcagtgatttggatatt |
13898478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 13886910 - 13886729
Alignment:
| Q |
22 |
gttccattatgatgtttaagaatgtcagtgatccattcatacaagttggttttgagtcctttgattaaataaggcagcattccgaaaataggccaattgg |
121 |
Q |
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| T |
13886910 |
gttccattttgatgtttaagtgtttcggttatgccttcatacatgttggttttgagtcctatcattaaggaaggtagcattccaagaataggccaatttg |
13886811 |
T |
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| Q |
122 |
gtaggccacgatgttttttcgatcttaaagaacgaatgaatatgaaaacaatggctgcaataataatctcagtgatttggat |
203 |
Q |
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| T |
13886810 |
ttaggccatgatgtttcttggagtgcaaggcatgaatgattatgaagacaatggatgcaataataatttctatgatttggat |
13886729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 1035346 - 1035538
Alignment:
| Q |
20 |
atgttccattatgatgtttaagaatgtcagtgatccattcatacaagttggttttgagtcctttgattaaataaggcagcattccgaaaataggccaatt |
119 |
Q |
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| T |
1035346 |
atgttccattgtgatgcttaagaatgtcagtgatccattcatacaagtttattttgagtcctttgattaaataaggcagcattccaaaaataggccaatt |
1035445 |
T |
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| Q |
120 |
gggtagg------ccacgatgttttttcgatcttaaagaacgaatgaatatgaaaacaatggctgcaataataatctcagtgatttggatatt |
206 |
Q |
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| T |
1035446 |
ggttaggccatgaccatgatgttttttcgatcttaaagaacgaatgaatatgaaaacaatggctgcaataataatctcagtgatttgaatatt |
1035538 |
T |
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