View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_14 (Length: 598)
Name: NF19175_low_14
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 15 - 408
Target Start/End: Complemental strand, 52442044 - 52441662
Alignment:
| Q |
15 |
tacaaaactaacaacattcataatctctctttagtaaaaataataattcacaatctcactctaaaaagagctaactacattcatatcattcnnnnnnnac |
114 |
Q |
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| T |
52442044 |
tacaaaactaacaacattcataatctctctttagtaaaaataataattcataatctcactctaaaaagagctaactacattcatatcattcttttttcac |
52441945 |
T |
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| Q |
115 |
aatgttcataacttagtgcttatttgatatgatatcacagtaaattgaataaaatcacgctaagctactgttatttttttaaaaagatacannnnnnnnc |
214 |
Q |
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| T |
52441944 |
a-------taatttagtgcttatttgatat-----cacagtaaattgaataaaatcacgctaagctaatgttatttttttaaaaagatacattttttttc |
52441857 |
T |
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| Q |
215 |
tctcaacaaaatgaaggtgtaattgtgatgaattacttttaaccaatatatgaatgataaaagtgataaaagattcatacattttaaacatgtcatgttt |
314 |
Q |
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| T |
52441856 |
tcacaataaaatgaaggtgtaattgtgatgaattacttttaaccaatatgtgaatgataaaagtgataaaagattcatacattttaaacatgtcatgttt |
52441757 |
T |
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| Q |
315 |
accatattgaatttcatacagtaatt-ttttgacatatttacactccacgataatcatgatcgttaaatcaagatcaaatggtttacagagtttg |
408 |
Q |
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| T |
52441756 |
accatattgaatttcatatagtaatttttttgacatatttacactccatgataatcatgatcgttaaatcgagatcaaatggtttacaaagtttg |
52441662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 476 - 586
Target Start/End: Complemental strand, 52441593 - 52441483
Alignment:
| Q |
476 |
gggatgaaagtcactcatagaaatttgtagaggcagttctgagtctgactagagagagaaatagcgtagagtgtcttaacaagcttctcgtgagtcacca |
575 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52441593 |
gggatgaaagtcactcatagaaatttgtagaggcagttctgagtctgactagagagagaaatagcgtagagtgtcttaacaagcttctcgtgagtcacca |
52441494 |
T |
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| Q |
576 |
tttcttcttct |
586 |
Q |
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| T |
52441493 |
tttcttcttct |
52441483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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