View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19175_low_141 (Length: 216)

Name: NF19175_low_141
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19175_low_141
NF19175_low_141
[»] chr1 (4 HSPs)
chr1 (52-198)||(41430838-41430984)
chr1 (52-103)||(41425526-41425577)
chr1 (52-104)||(41440992-41441044)
chr1 (61-106)||(41452274-41452319)
[»] scaffold0274 (2 HSPs)
scaffold0274 (52-198)||(13939-14085)
scaffold0274 (52-106)||(18392-18446)
[»] chr7 (1 HSPs)
chr7 (53-152)||(7764085-7764183)
[»] chr2 (3 HSPs)
chr2 (52-155)||(33362111-33362213)
chr2 (52-105)||(33369185-33369238)
chr2 (161-198)||(33369081-33369118)


Alignment Details
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 52 - 198
Target Start/End: Complemental strand, 41430984 - 41430838
Alignment:
Q  52 ggacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaaagataagaatttcagaaacaactataaaacagagataaaataaaatgg 151  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41430984 ggacaatggactacaaaagtaacaaacaatgattatttgtttgtaaagaaaaagataagaatttcagaaacaactataaaacagagataaaataaaatgg 41430885  T
Q  152 aactcacagccccttatttctaaaggtaccagtagcttcataacaac 198  Q
    |||| | ||||||||||| ||||||||||||||||||||||||||||    
T  41430884 aacttatagccccttattactaaaggtaccagtagcttcataacaac 41430838  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 41425577 - 41425526
Alignment:
Q  52 ggacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaa 103  Q
    |||||||||||||||| ||||||||| |||||| ||||||||||||||||||    
T  41425577 ggacaatggactacaaaagtaacaaataatgatcatttgtttgtaaagaaaa 41425526  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 41441044 - 41440992
Alignment:
Q  52 ggacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaaa 104  Q
    |||||||||||||||  |||||||||||||||||||||||| ||| |||||||    
T  41441044 ggacaatggactacagaagtaacaaacaatgattatttgttggtacagaaaaa 41440992  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 41452319 - 41452274
Alignment:
Q  61 actacaagagtaacaaacaatgattatttgtttgtaaagaaaaaga 106  Q
    ||||||| |||||||||||||||||||||||| ||||  |||||||    
T  41452319 actacaaaagtaacaaacaatgattatttgttggtaagaaaaaaga 41452274  T

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Target: scaffold0274 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 52 - 198
Target Start/End: Original strand, 13939 - 14085
Alignment:
Q  52 ggacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaaagataagaatttcagaaacaactataaaacagagataaaataaaatgg 151  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  13939 ggacaatggactgcaaaagtaacaaacaatgattatttgtttgtaaagaaaaagataagaatttcagaaacaactataaaacagagttaaaataaaatga 14038  T
Q  152 aactcacagccccttatttctaaaggtaccagtagcttcataacaac 198  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  14039 aacttacagccccttatttctaaaggtaccagtagcttcataacaac 14085  T

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Target: scaffold0274; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 18392 - 18446
Alignment:
Q  52 ggacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaaaga 106  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  18392 ggacaatggactacaaaagtaacaaataatgattatttgtttgtaaagaaaaaga 18446  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 53 - 152
Target Start/End: Original strand, 7764085 - 7764183
Alignment:
Q  53 gacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaaagataagaatttcagaaacaactataaaacagagataaaataaaatgga 152  Q
    ||||| ||||||||| |||||||||||| ||||| ||||| |||||||||||||  ||| ||| ||||||   ||||||||| |||||||||||||||||    
T  7764085 gacaacggactacaaaagtaacaaacaacgattacttgttggtaaagaaaaaga-cagacttttagaaacgtttataaaacatagataaaataaaatgga 7764183  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 33362213 - 33362111
Alignment:
Q  52 ggacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaaagataagaatttcagaaacaactataaaacagagataaaataaaatgg 151  Q
    ||||||||| |||||| || ||||||||| ||||||||||| ||||||||||| || ||| ||||| ||| |  | ||||||| ||||||||||||||||    
T  33362213 ggacaatgggctacaacagaaacaaacaaagattatttgttggtaaagaaaaacat-agactttcaaaaatatttttaaaacatagataaaataaaatgg 33362115  T
Q  152 aact 155  Q
    ||||    
T  33362114 aact 33362111  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 33369238 - 33369185
Alignment:
Q  52 ggacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaaag 105  Q
    |||||||||||| ||| |||||||||||||||||||||||| ||| ||||||||    
T  33369238 ggacaatggactgcaaaagtaacaaacaatgattatttgttggtagagaaaaag 33369185  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 33369118 - 33369081
Alignment:
Q  161 ccccttatttctaaaggtaccagtagcttcataacaac 198  Q
    |||||||||||||||||||||| |||||||||||||||    
T  33369118 ccccttatttctaaaggtaccaatagcttcataacaac 33369081  T

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