View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19175_low_2 (Length: 939)
Name: NF19175_low_2
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 773; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 773; E-Value: 0
Query Start/End: Original strand, 18 - 932
Target Start/End: Original strand, 41690312 - 41691205
Alignment:
| Q |
18 |
ataattgttgaagtgagttacaaattcgggaacgctgatataatggtatggtttgtcccttatgaaccagtactgctcttgatcctttctagaagtaacc |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41690312 |
ataattgttgaagtgagttacaaactcgggaacgctgatataatggtatgttttgtcccttatgaaccagtactgctcttgatcctttctagaagtaacc |
41690411 |
T |
|
| Q |
118 |
tcttgtaagaaatctgcaactcctttcctttccgggcatttgaatccaacgctctcgaaaaaattgagaacgtgtacgcgaggaccttggtagacaatct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41690412 |
tcttgtaagaaatctgcaactcctttcctttccgggcatttgaatccaacgctctcaaaaaaattgagaacgtgttcgcgaggaccttggtagacaatct |
41690511 |
T |
|
| Q |
218 |
gaccttctgaaagtaagattatgtcatcaaaaagatcaaatgtttctggtgcaggttgtaaaagagagattatcattgtaacatccatgatatgaactag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41690512 |
gaccttctgaaagtaagattatgtcatcaaaaagatcaaatgtttctggtgcaggttgtaaaagagagattatcattgtaacatccatgatatgaactag |
41690611 |
T |
|
| Q |
318 |
ctgtctcaagaatctgactatttggaaggttgtagaactatctagaccggtcgagatctcatccattaagaaaacttttgcaggtcctaccagcatctca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41690612 |
ctgtctcaagaatctgactatttggaaggttgtagaactatctagaccggtcgagatctcatccattaagaaaacttttgcaggtcctaccagcatctca |
41690711 |
T |
|
| Q |
418 |
cctgcattttacactgacactgcttgaggaaattggacaaagaagagcttttgaaagacttgttcataaccagttttcaacttatttccttaaattcttc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41690712 |
cctgcattttacactgacactgcttgagaaaattggacaaagaagagcttttgaaagacttgttcataaccagttttccacttatttccttaaattcttc |
41690811 |
T |
|
| Q |
518 |
agattgcttatgaaaacaacttactttaaaacattatagaaatagcctatatataaacacgtatatgataacctgcgtgcttaattaagccatttataca |
617 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41690812 |
agattgcttatgaaaacaacttacttgaaaacattatagaaatagcctatatataaacacgtatatgataacctgcgtgcttaattaagccatttataca |
41690911 |
T |
|
| Q |
618 |
aacaaggcctaaggttaaattagnnnnnnnagaaaatgtttaaattgactgttttcactgtatcttgtacaaatctttgaaaatataattaaacatggac |
717 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41690912 |
aacaaggcctaaggttaaattagtttttttagaaaatgtttaaattgactgttttcactgtatcttgtacaaatctttgaaaatataattaaacatggac |
41691011 |
T |
|
| Q |
718 |
aatttacaattaaaagtgaaaacagaaaacgttttcttaaaccaaacagatcataacgttttgtcgttagtaacttttggtagaattatcttctcatacc |
817 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41691012 |
aatttacaattaaaagtgaaaacagaaaacgttttcttaaaccaaacagatcataacgttttgtcgttagtaa---------------------catacc |
41691090 |
T |
|
| Q |
818 |
cgtagttaaccgcnnnnnnnctcccccggatattccccttctcatctcatctcccaccatagtatcagcacacatttccaatccaagaatctgaatccat |
917 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41691091 |
cgtagttaaccgctttttttctcccccggatattccccttctcatctcatctcccaccatagtatcagcacacatttccaatccaagaatctgaatccat |
41691190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 71 - 425
Target Start/End: Complemental strand, 19539580 - 19539226
Alignment:
| Q |
71 |
tgtcccttatgaaccagtactgctcttgatcctttctagaagtaacctcttgtaagaaatctgcaactcctttcctttccgggcatttgaatccaacgct |
170 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||| || ||||||| |||||||||||| ||||||||||| || || | |
|
|
| T |
19539580 |
tgtcccttctgaaccagtactgctcttgatcctttctagaagttacctcttgtaaaaagtctgcaattcctttcctttctgggcatttgaagcccacatt |
19539481 |
T |
|
| Q |
171 |
ctcgaaaaaattgagaacgtgtacgcgaggaccttggtagacaatctgaccttctgaaagtaagattatgtcatcaaaaagatcaaatgtttctggtgca |
270 |
Q |
| |
|
| ||||||| ||||| | | |||||||| |||||||||| ||||||||||||||| ||||||||||||||||| | |||||||||||||| |
|
|
| T |
19539480 |
ttgaaaaaaatctagaacactctccctgggaccttgatagacaatctcaccttctgaaagtaatattatgtcatcaaaaaggttgtatgtttctggtgca |
19539381 |
T |
|
| Q |
271 |
ggttgtaaaagagagattatcattgtaacatccatgatatgaactagctgtctcaagaatctgactatttggaaggttgtagaactatctagaccggtcg |
370 |
Q |
| |
|
||||| | ||| ||||||||||| || |||||| |||||||||| | || |||| || ||||| |||||||||||||| |||||||| | ||| || | |
|
|
| T |
19539380 |
ggttgcagaagtgagattatcatagtgacatccgtgatatgaaccatttgcctcataaacctgacaatttggaaggttgtggaactatccaaaccagttg |
19539281 |
T |
|
| Q |
371 |
agatctcatccattaagaaaacttttgcaggtcctaccagcatctcacctgcatt |
425 |
Q |
| |
|
| || ||||||| |||| |||||||||||||||| | ||| ||||||||||| |
|
|
| T |
19539280 |
aaattccatccataaagagtgcttttgcaggtcctactaacatttcacctgcatt |
19539226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 846 - 909
Target Start/End: Complemental strand, 19538960 - 19538897
Alignment:
| Q |
846 |
gatattccccttctcatctcatctcccaccatagtatcagcacacatttccaatccaagaatct |
909 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| | ||||||||||| ||||||| |||||||||| |
|
|
| T |
19538960 |
gatatgccccttctcatttcatctcccaccaaaatatcagcacacgtttccaacccaagaatct |
19538897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 847 - 908
Target Start/End: Original strand, 19537978 - 19538039
Alignment:
| Q |
847 |
atattccccttctcatctcatctcccaccatagtatcagcacacatttccaatccaagaatc |
908 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| | |||||||||||||||||| ||||||||| |
|
|
| T |
19537978 |
atataccccttctcttctcatctcccaccaaaatatcagcacacatttccagcccaagaatc |
19538039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 67 - 250
Target Start/End: Original strand, 43526954 - 43527136
Alignment:
| Q |
67 |
ggtttgtcccttatgaaccagtactgctcttgatcctttctagaagtaacctcttgtaagaaatctgcaactcctttcctttccgggcatttgaatccaa |
166 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| || ||||||| | |||||||||| ||||||||||| || | |
|
|
| T |
43526954 |
ggtttgtcccttctgaaccagtactgctcttgatcctttctagaagttacctcttgtaaaaagtctgcaa-ttctttcctttctgggcatttgaagccca |
43527052 |
T |
|
| Q |
167 |
cgctctcgaaaaaattgagaacgtgtacgcgaggaccttggtagacaatctgaccttctgaaagtaagattatgtcatcaaaaa |
250 |
Q |
| |
|
| || | ||||||| ||||| | ||||||||||| |||||||||| |||||| |||||||| |||||| ||||||||| |
|
|
| T |
43527053 |
cactttgaaaaaaatctagaacactctcccgaggaccttgatagacaatctcaccttcggaaagtaatattatgacatcaaaaa |
43527136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 237 - 425
Target Start/End: Complemental strand, 43526890 - 43526702
Alignment:
| Q |
237 |
tatgtcatcaaaaagatcaaatgtttctggtgcaggttgtaaaagagagattatcattgtaacatccatgatatgaactagctgtctcaagaatctgact |
336 |
Q |
| |
|
||||||||||||||| | | ||||||||||||||||||| | ||| ||||||||| | ||||||||| ||||||||| | | |||| || ||||| |
|
|
| T |
43526890 |
tatgtcatcaaaaaggttatatgtttctggtgcaggttgcagaagtgagattatcgtagtaacatccgtgatatgaaacatttacctcataaacctgaca |
43526791 |
T |
|
| Q |
337 |
atttggaaggttgtagaactatctagaccggtcgagatctcatccattaagaaaacttttgcaggtcctaccagcatctcacctgcatt |
425 |
Q |
| |
|
|||||||||||||| |||||||| | ||| || || || ||||||| |||| |||||||||||||||| | ||| ||||||||||| |
|
|
| T |
43526790 |
atttggaaggttgtggaactatccaaaccagttgaaattccatccataaagagtgcttttgcaggtcctactaacatttcacctgcatt |
43526702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 202 - 416
Target Start/End: Original strand, 42135613 - 42135827
Alignment:
| Q |
202 |
ccttggtagacaatctgaccttctgaaagtaagattatgtcatcaaaaagatcaaatgtttctggtgcaggttgtaaaagagagattatcattgtaacat |
301 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| ||| ||||||||||| || |||||||| |||||||| ||||||| |||||| || | |||||| |||| |
|
|
| T |
42135613 |
ccttggtatacaatttgaccttctgaaagtaggataatgtcatcaaagagttcaaatgtctctggtgctggttgtagaagagaaatcaccattgttacat |
42135712 |
T |
|
| Q |
302 |
ccatgatatgaactagctgtctcaagaatctgactatttggaaggttgtagaactatctagaccggtcgagatctcatccattaagaaaacttttgcagg |
401 |
Q |
| |
|
| | || ||||| | ||| ||| ||| || |||||| || || || |||||||||| || || || || |||||||| || | |||||||| || |
|
|
| T |
42135713 |
ctaatatgtgaaccatttgtttcatgaacttggttatttgaaaagtggttgaactatctaatcctgttgatatttcatccatgaacagtacttttgctgg |
42135812 |
T |
|
| Q |
402 |
tcctaccagcatctc |
416 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
42135813 |
tcctaccagcatctc |
42135827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 281
Target Start/End: Original strand, 42175862 - 42175944
Alignment:
| Q |
199 |
ggaccttggtagacaatctgaccttctgaaagtaagattatgtcatcaaaaagatcaaatgtttctggtgcaggttgtaaaag |
281 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||| || ||||| |||||||| |||||||| |||||||| || |||||||| |
|
|
| T |
42175862 |
ggaccttgatatacaatttgaccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctgtaaaag |
42175944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 284
Target Start/End: Original strand, 42156693 - 42156775
Alignment:
| Q |
202 |
ccttggtagacaatctgaccttctgaaagtaagattatgtcatcaaaaagatcaaatgtttctggtgcaggttgtaaaagaga |
284 |
Q |
| |
|
||||| || ||||| |||||||||||||||| || ||||| ||||| || |||||||| |||||||| || ||||||||||| |
|
|
| T |
42156693 |
ccttgatatacaatttgaccttctgaaagtagaataatgtcgtcaaagagttcaaatgtctctggtgctggctgtaaaagaga |
42156775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 535
Target Start/End: Original strand, 35394502 - 35394561
Alignment:
| Q |
477 |
ttgttcataaccagttttcaacttatttccttaaattcttc-agattgcttatgaaaaca |
535 |
Q |
| |
|
|||||||||| | ||||||||||||||| | |||||||||| |||| ||||||||||||| |
|
|
| T |
35394502 |
ttgttcataagctgttttcaacttattttcataaattcttcaagatagcttatgaaaaca |
35394561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University