View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_21 (Length: 566)
Name: NF19175_low_21
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 233 - 551
Target Start/End: Original strand, 39410296 - 39410616
Alignment:
| Q |
233 |
ataggaacatgttcatattcacgtgtaacttgagtatcaatcttctctgtttttccattagaaagtaatcgtattacatgaccaaagtcataacttaccc |
332 |
Q |
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| T |
39410296 |
ataggaacatgttcatattcacgtgtaacttgagtattaatcttctctgtttttccattagaaagtgatcgtattacatgaccaaaatcataacttaccc |
39410395 |
T |
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| Q |
333 |
ttaataccatgcatctaaaccaagcttcttgaaatacacaaattcagtct-tcttcttgggaaaaaaggttacacttttttggtcactactagaatttga |
431 |
Q |
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| T |
39410396 |
ttaatacgatgcatctaaaccaagcttcttgaaatacataaaatcagtctctcttcttgggaaaaaaggttacagttttttggtcactactagaatttga |
39410495 |
T |
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| Q |
432 |
cagatttgctaaatgtccaatctccttcgaaatttgagtatataacattataac-tgtcttttcttttactttattgctcacaatttctttgctccgcct |
530 |
Q |
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| T |
39410496 |
cagatttgctaaatgtccaatctccttcgaaatttgagtatataacattataacttgtcttttcttttactctatcgctcgcaatttctttgctccgctt |
39410595 |
T |
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| Q |
531 |
taacgggtgaagagaaccatc |
551 |
Q |
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| T |
39410596 |
tgacgggtgaaaaggaccatc |
39410616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 39411954 - 39411882
Alignment:
| Q |
159 |
attatctctgtttcttggctttctagtgtttctttctcatgtattttaaatctccataggcttaaatatgtta |
231 |
Q |
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| T |
39411954 |
attatctctgtttcttggctttctagtctttctttctcatgtattttaaatctccataggcttaaatatgtta |
39411882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 151 - 287
Target Start/End: Original strand, 39157080 - 39157216
Alignment:
| Q |
151 |
ttaacaggattatctctgtttcttggctttctagtgtttctttctcatgtattttaaatctccat-aggcttaaatatgttatataggaacatgttcata |
249 |
Q |
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| T |
39157080 |
ttaacaggattatcactatttcttggcttcataatctttctttctcttgtattttaaattatcaggaggcttaaatttgt-atgtaaaaacatgttcata |
39157178 |
T |
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| Q |
250 |
ttcacgtgtaacttgagtatcaatcttctctgtttttc |
287 |
Q |
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| T |
39157179 |
ttcacatgtaacttgagcattgatcttctctgtttttc |
39157216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 39412028 - 39411950
Alignment:
| Q |
23 |
ttttacatgtgaatatgtatgtcctccggtagtagtagtagtaatatttatgttagcaggtttccataaccgcatttctttacattat |
110 |
Q |
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| T |
39412028 |
ttttacatgtgaatatgtatgtcctc---------gagtagtagtatttatgttagcaggtttccataaccacatttctttacattat |
39411950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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