View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_22 (Length: 553)
Name: NF19175_low_22
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_22 |
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| [»] scaffold0219 (4 HSPs) |
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Alignment Details
Target: scaffold0219 (Bit Score: 398; Significance: 0; HSPs: 4)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 440
Target Start/End: Complemental strand, 13987 - 13566
Alignment:
| Q |
19 |
cgaattggggacacattaaacccaacgaatggtttttgtgcaaaaatggaacaatgcaatctccagttgatttgagagatgatgtggttcaaatatcaaa |
118 |
Q |
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| T |
13987 |
cgaattggggacacattaaacccaacgaatggtttttgtgcaaaaatggaacaatgcaatctccaattgatttgagagatgaggtggttcaaatatcaaa |
13888 |
T |
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| Q |
119 |
tttaggaccacttcagatcaactacaatccctctaatgcaactcttaaaaacaggggtcatgatgtcaaggtaagttaataacaaatatcatactataaa |
218 |
Q |
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| T |
13887 |
tttaggaccacttcagaccaactacaatccctctaatgcaactcttaaaaacaggggtcatgatgtcaaggtaagttaataacaaatatcttactataaa |
13788 |
T |
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| Q |
219 |
tgaattgttaaacaacttataagaaaacaactttttatacaaataattttctgaatcattttttctatgaataggttgaattgatgtcgaactcaagcta |
318 |
Q |
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| T |
13787 |
tgaattgttaaacaacttataagaaaacaactttttatacaaataattttctgaatcattttttctatgaataggttgaattgatgtcgaactcaagcta |
13688 |
T |
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| Q |
319 |
tctacaaattgatggaacacagtatgaacttctacagttccattggcatactccatctgaacacaccattaatggtgtaaggtacatacttattgtatac |
418 |
Q |
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| T |
13687 |
tctacaaattgatggaacacagtatgaacttctacagttccattggcatactccatctgaacacaccatcaatggtgtaaggtacatacttactgtatac |
13588 |
T |
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| Q |
419 |
ccttaattcatgataattatat |
440 |
Q |
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| T |
13587 |
ccttaattcatgataattatat |
13566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 25252 - 25073
Alignment:
| Q |
21 |
aattggggacacattaaacccaacgaatggtttttgtgcaaaaatggaacaatgcaatctccagttgatttgagagatgatgtggttcaaata---tcaa |
117 |
Q |
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| T |
25252 |
aattggggagacattaaaccc---gaatggtttaggtgcaaaaatggaacaatgcaatcgccaattgatttgttgaatcatagggttcaaattgtgtcca |
25156 |
T |
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| Q |
118 |
atttaggaccacttcagatcaactacaatccctctaatgcaactcttaaaaacaggggtcatgatgtcaaggtaagttaataa |
200 |
Q |
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| T |
25155 |
atttaggaggacttcagatcaactacactccctctaatgcaactcttaaaaataggggtcatgatatcaaggttagtttataa |
25073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 24987 - 24862
Alignment:
| Q |
284 |
tatgaataggttgaattgatgtcgaactcaagctatctacaaattgatggaacacagtatgaacttctacagttccattggcatactccatctgaacaca |
383 |
Q |
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| T |
24987 |
tatgaatagctggaattgattgcaaactcaagctatctacaaattaatggaactcagtatgtacttaaacagttacattggcattctccctctgaacaca |
24888 |
T |
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| Q |
384 |
ccattaatggtgtaaggtacatactt |
409 |
Q |
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| T |
24887 |
ccatagatggcaaaaggtacatactt |
24862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 482 - 543
Target Start/End: Complemental strand, 13514 - 13453
Alignment:
| Q |
482 |
tttgctgttggaaaatttgggcttcatgactttcttataagaaaattgttcttctacctttg |
543 |
Q |
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| T |
13514 |
tttgttgttagaaaatttgggcttcatgactttcttataagaaaattgttcttctacttttg |
13453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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