View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_24 (Length: 538)
Name: NF19175_low_24
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_24 |
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| [»] scaffold0449 (1 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Original strand, 3574 - 4096
Alignment:
| Q |
1 |
tgcagacaagcgtttcaatgaaatcaaataataacactataataattttaaactaaaacaatgcaaatcccatcatgattaattaaacattactactaaa |
100 |
Q |
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| T |
3574 |
tgcagacaagcgtttcaatgaaatcaaataataacactataataattttaaactaaaacaatgcaaataccatcatgattaattaaacattactactaaa |
3673 |
T |
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| Q |
101 |
tattagtaactcttagaagaggaaatagaacatagtagtacaaatatcaaaggaacaatctgcatatataaatgaaaataacaatgatactgagtaaata |
200 |
Q |
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| T |
3674 |
tattagtaactcttagaagaggaaatagaacatagtagtacaaatatctaaggaacaatctgcatatataaatgaaaataacaatgatactgggtaaata |
3773 |
T |
|
| Q |
201 |
aacaagatgcatgctagccacatacatcaaa-gggggcagcaacaacagtagagagtagatagagtatagttatagtgaaagtggagaggccaagatctt |
299 |
Q |
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| T |
3774 |
aacaagttgcatgctagccacatacatcaaaagggggcagcaacaacagtagagagtagatagagtatagttgtagtgaaagtggagaggccaagatctt |
3873 |
T |
|
| Q |
300 |
tgagaggaatgacatattggagcatgagcagcgcgtaaaagcaccatccaaagaaaaatagaaaatcacatatcaaagttatcgcgcggcagctggttca |
399 |
Q |
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| T |
3874 |
tgagaggaatgacatattggagcatgagcagcgcgtaaaagcaccatccaaagaaaaatagaaaatcacatatcaaagttatggcgcggcggctggtcca |
3973 |
T |
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| Q |
400 |
ggttgggcagagcattagggttttcttgaggatgattgagagaatgtaacatacaaatgacgacgcagcaaatatcgtaaactctttcactatctctgat |
499 |
Q |
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| T |
3974 |
ggttgggcagagcattagggttttcttgaggatgattgagagaatgtaacatacaaatgacgacgcagcaaatatcgtaaactctttcactatctctgat |
4073 |
T |
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| Q |
500 |
gtgggagggtcatatgagaagaa |
522 |
Q |
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| T |
4074 |
gtgggagggtcatatgagaagaa |
4096 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 43955456 - 43955496
Alignment:
| Q |
108 |
aactcttagaagaggaaatagaacatagtagtacaaatatc |
148 |
Q |
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| T |
43955456 |
aactcttataacaggaaatagaacatagtagttcaaatatc |
43955496 |
T |
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