View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_27 (Length: 503)
Name: NF19175_low_27
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 9 - 485
Target Start/End: Original strand, 39114829 - 39115306
Alignment:
| Q |
9 |
atcagagatttaataagaaaagaaataaagataatatgacgtgttaaatgagtttatgagaattaagagagtctacatatcattgtactcttcaagttta |
108 |
Q |
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| T |
39114829 |
atcagagatttaataagaagagaaataaagataatgtgacgtgttaaatgagtttatgagaattaagagagtctacatatcattgtactcttcaagttta |
39114928 |
T |
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| Q |
109 |
gatgttttaatgtgtaaatgttaactcgtgctcttaaaccctaaataaatttaaaagataaagaggatacaaaatactggaagcacatgaataattaaac |
208 |
Q |
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| T |
39114929 |
gatgttttaatgtgtaaatgttaactcgtgctcttaaaccctaaataaatttaaaagataaagaggatacaaaataccggaagcacatgtataattaaac |
39115028 |
T |
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| Q |
209 |
cacgtgtggtatacaacccaaacaggaataaaaacatattattcgactacaacaaaaatggttttgaaagcaaccccgacaagtagaaaagattccaaag |
308 |
Q |
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| T |
39115029 |
cacgtgtggtatacaacccaaacaggaat-aaaacatattattcgactacaacaaaaatggttttgaaagcaaccccgacaagtagaaaagactccaaag |
39115127 |
T |
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| Q |
309 |
caaacaataacacaacacaggcactacctagcgagcatgcatacgagcacgaaaccatatagc--nnnnnnnnngttttttgtgaatgtttgctatggtg |
406 |
Q |
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| T |
39115128 |
caaacaataacacaacacaggcactacctagcgagcatgcatacgagcacgaaaccatatagcaaaaaaaaaaagttttttgtgaatgtttgctatggtg |
39115227 |
T |
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| Q |
407 |
cctaatagcaaatgaattcacgtacccatatcaccacataaggttgggaggcggttgacttgtatcaccggaagggtat |
485 |
Q |
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| T |
39115228 |
cctaatagcaaatgaattcacgtacccatatcaccacataaggttgggaggcggttgacttgtatcaccggaagggtat |
39115306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 22865193 - 22865229
Alignment:
| Q |
44 |
atgacgtgttaaatgagtttatgagaattaagagagt |
80 |
Q |
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| T |
22865193 |
atgatgtgttaaatgagtttatgagaataaagagagt |
22865229 |
T |
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