View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19175_low_29 (Length: 501)
Name: NF19175_low_29
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_29 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 11 - 488
Target Start/End: Original strand, 4689097 - 4689572
Alignment:
| Q |
11 |
tatataccatttcttaatttccccctccctttcttagccaccactctcctccaagctctctccataggtgggactaggagtaaggctataatagatccta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4689097 |
tatataccatttcttaatttccccctccctttcttagccaccactctcctccaagctctctccataggtgggactaggagtaaggctataatagatccta |
4689196 |
T |
|
| Q |
111 |
tatgttaattaattagttgaaagctttgaattgattttcgtcaaaacaattgaaaagccatggtccaaagttatcataataagtggcaaagtatgcattg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4689197 |
tatgttaattaattagttgaaagctttgaattgaatttcgtcaaaacaattgaaaagccatggtccaaagttatcataataagtggcaaagtatgcattg |
4689296 |
T |
|
| Q |
211 |
aataatgtcatatgtgtgatttcaaaatactcgtactaatcagttgtatatccgataattaattgctatctttttgatgagacttccaagccatcattta |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4689297 |
aataatgtcatatgtgtgatttcaaaatactcgtactaatcagttgtatatccgataattaattgctatctttttgatgagacttccaagccatcattta |
4689396 |
T |
|
| Q |
311 |
catccatagcccctatacatctcacttttgatgtgaaaattattgttcattaatcttcttatatatttaccgaaaaaatgttaacgagtgtgtccgaaac |
410 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4689397 |
catccatag-ccctata-atctcacttttgatgtgaaaattattgttcattaatcttcatatatatttattgaaaaaatgttaacgagtgtgtccgaaat |
4689494 |
T |
|
| Q |
411 |
attcagtagcaagaccttatatatttatattgttgtttactttattaagcaccttatgttaggcgtgtcaagtattat |
488 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4689495 |
attcagcagcaagaccttatatatttatattgttgtttactttattaagcaccttatgttaggcgtgtcaattattat |
4689572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University