View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19175_low_3 (Length: 863)

Name: NF19175_low_3
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19175_low_3
NF19175_low_3
[»] chr4 (1 HSPs)
chr4 (17-850)||(28226978-28227823)


Alignment Details
Target: chr4 (Bit Score: 711; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 711; E-Value: 0
Query Start/End: Original strand, 17 - 850
Target Start/End: Original strand, 28226978 - 28227823
Alignment:
Q  17 atgaacggtcagatttcaaatatgtttagccgcaatgttttgctcaatcatgttcgggcaagagttttgccaagatattgttgaatatgttcctcttgtg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28226978 atgaacggtcagatttcaaatatgtttagccgcaatgttttgctcaatcatgttcgggcaagagttttgccaagatattgttgaatatgttcctcttgtg 28227077  T
Q  117 tacctgactaactgtctattattatctgctatacattggtatttcttgtattgtaaaaagctgtaatttcattgagtttatatattttgcctagaatttc 216  Q
    ||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28227078 tacctgactaactgtctattattat-tgttatacattggtattccttgtattgtaaaaagctgtaatttcattgagtttatatattttgcctagaatttc 28227176  T
Q  217 aacgtgatagaaggaatggtatagaaaatattccatcattgtaagtctcgaacttcttgcttacatgataaatattattggataaaatacaaaaaataag 316  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28227177 aacctgatagaaggaatggtatagaaaatattccatcattgtaagtctcgaacttcttgcttacatgataaatattattggataaaatacaaaa-ataag 28227275  T
Q  317 gtgtctgaggataataaagttttgaaccattgtattattgtgtcttttctttataatatttatttgcaatttacaagtgaaatgccagcggacatgagtt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28227276 gtgtctgaggataataaagttttgaaccattgtattattgtgtcttttctttataatatttatttgcaatttacaagtgaaatgccagcggacatgagtt 28227375  T
Q  417 atacatagtacttcaggtcaaatactaggaacaagacatataagagagcagcagcacatgttacttttttgtgtgaataaaaagcagatgttacttaaag 516  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28227376 atacatagtacttcaggtcaaatactaggaacaggacatataagagagcagcagcacatgttacttttttgtgtgaataaaaagcagatgttacttaaag 28227475  T
Q  517 cacacatcgacagtactttggacaatgtatttagagctgggatgagttataatcgtgnnnnnnngtttgcaccctaaatttgatcattaggctttaattg 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||||||||||||||||||||||||||||||||||||    
T  28227476 cacacatcgacagtactttggacaatgtatttagagctgggatgagtcataatcgtgtttttttgtttgcaccctaaatttgatcattaggctttaattg 28227575  T
Q  617 gaatgacagaaggggg-aaaaaataatgaatactatggaaaggacaaaggaggcaaaggagagattattacttctcttgtttggtatcataaaataaaat 715  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28227576 gaatgacagaagggggaaaaaaataatgaatactatggaaaggacaaaggaggcaaaggagagattattacttctcttgtttggtatcataaaataaaat 28227675  T
Q  716 aaacaagat-------------nnnnnnnncttttcctttgttggttcacaaaataaaagagtagtaagctcagtgaaactttaacaccctaaactctat 802  Q
    |||||||||                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28227676 aaacaagataaaaaaaaataaaaataaaaacttttcctttgttggttcacaaaataaaagagtagtaagctcagtgaaactttaaccccctaaactctat 28227775  T
Q  803 atcttttgctaattgctaatgttctaccaaacatgggaccaactttgt 850  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28227776 atcttttgctaattgctaatgttctaccaaacatgggaccaactttgt 28227823  T

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