View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_30 (Length: 499)
Name: NF19175_low_30
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 10 - 392
Target Start/End: Original strand, 30836370 - 30836752
Alignment:
| Q |
10 |
atgaacgaagcacaagagaatttagaatggaacaacaccatgcaacaaggctttgctcgcatggatgatgaagttcaaagatggaacagcagtagtcaaa |
109 |
Q |
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| T |
30836370 |
atgaacgaaggacaagagaatttagaatggaacaacaccatgcaacaaggctttgctcgcatggatgatgaagttcaaagatggaacagcagtagtcaaa |
30836469 |
T |
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| Q |
110 |
gtgttacttgtagatgtgagcttcaaactcctcactgtgatgctgttggatccacagctgttgtagctgttgttactccaaataaaattatcgtttcaaa |
209 |
Q |
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| T |
30836470 |
gtgttacttgtagatgtgagcttcaaactcctcactgtgatgctgttggatccacagctgttgtagctgttgttactccaaacaaaattatcgtttcaaa |
30836569 |
T |
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| Q |
210 |
ctgtggtgattcaagagctgttctttgccgtaatggtgtcgctattcctctctcctcagatcataaaccggatcgacccgatgaattactccgagtcgaa |
309 |
Q |
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| T |
30836570 |
ctgtggtgattcaagagctgttctttgccgtaatggtgtcgctattcctctctcctcagatcataaaccggatcgacccgatgaattactccgagtcgaa |
30836669 |
T |
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| Q |
310 |
gcagccggaggacgtgtgatctattgggatggtccaagagttcttggagtacttgccatgtctagagccataggtgactgaca |
392 |
Q |
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| T |
30836670 |
gcagccggaggacgtgtgatctattgggatggtccaagagttcttggagtacttgccatgtctagagccataggtgactgaca |
30836752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 124 - 275
Target Start/End: Original strand, 34536562 - 34536713
Alignment:
| Q |
124 |
tgtgagcttcaaactcctcactgtgatgctgttggatccacagctgttgtagctgttgttactccaaataaaattatcgtttcaaactgtggtgattcaa |
223 |
Q |
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| T |
34536562 |
tgtgagcttcaaactcctcactgtgatgctgttggttctactgctgttgttgccgttgttacgccggagaaaatcattgtctcgaattgtggtgattcac |
34536661 |
T |
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| Q |
224 |
gagctgttctttgccgtaatggtgtcgctattcctctctcctcagatcataa |
275 |
Q |
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| T |
34536662 |
gggccgtcctttgccggaacggggttgccattcctctttcctccgatcataa |
34536713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 386
Target Start/End: Original strand, 34536832 - 34536906
Alignment:
| Q |
312 |
agccggaggacgtgtgatctattgggatggtccaagagttcttggagtacttgccatgtctagagccataggtga |
386 |
Q |
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| T |
34536832 |
agccggaggacgtgtgatctattgggatggtgcaagagtgcttggagtgttggccatgtcaagagctattggtga |
34536906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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