View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19175_low_33 (Length: 490)
Name: NF19175_low_33
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_33 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 172 - 475
Target Start/End: Complemental strand, 20357029 - 20356729
Alignment:
| Q |
172 |
cacgatgaacaaaaaagatgatatgtcgagaattcagaaggggggaccttggatccataaaaattcttgcattgttctacacatctgggattacataaaa |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20357029 |
cacgatgaacaaaaaagatgatatgtcgagaattcaaaaggggg-accttggatccataaaaattcttgcattgttctacacatttgggattacataaaa |
20356931 |
T |
|
| Q |
272 |
tgtaacttaatatgggttaaagaacaactgatgtgaaaaccctgatgttaaattttaaagagaaggtataacatcagtgggtgaaaggcccgatgtggaa |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20356930 |
tgtaacttaatatgggttaaagaacaactgatgtgaaaaccctgatgttaaattttaaagagaaggtataacatcagtgggtgaaaggcccgatgtggaa |
20356831 |
T |
|
| Q |
372 |
agtttgatatactgtaacaacagttcgt-cccgatgtaaaatgacgtggac--ataccacataatgtcacctcatatcggttgccacatgatgtgaaaag |
468 |
Q |
| |
|
||||||||| | |||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20356830 |
agtttgata-----tcacaacaattcgtccccgatgtgaaatgacgtggacatataccacataatgtcacctcacatcggttgccacatgatgtgaaaag |
20356736 |
T |
|
| Q |
469 |
tacattt |
475 |
Q |
| |
|
||||||| |
|
|
| T |
20356735 |
tacattt |
20356729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 20358007 - 20357838
Alignment:
| Q |
9 |
gaagaatatggtatcctagacattctaaatgggtgcnnnnnnnnnnntgtagttgagaaattcattttagagaaacctatctagaaaggttcttacaaat |
108 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20358007 |
gaagaaaatgatatcctagacattctaaatgggtgcaaaaaaaaaaatgtagttgagaaattcattttagagaaacctatctagaaaggttcttacaaat |
20357908 |
T |
|
| Q |
109 |
ggcattagccaacatctggtgtggtatgaaaattattgatttatctgataatcttttgcaattcacgatg |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20357907 |
ggcattagccaacatctggtgtggtatgaaaattattgatttatctgataatcttttgcaattcacgatg |
20357838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 470
Target Start/End: Original strand, 24478497 - 24478665
Alignment:
| Q |
297 |
aactgatgtgaaaaccctgatgttaaattttaaagagaaggtataacatcagtgggtgaaaggcccgatgtggaaagtttgatatactgtaacaacagtt |
396 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||| |||| |||||||| || ||| ||| |||||||||| ||| || | ||| ||||| |
|
|
| T |
24478497 |
aactgatgtgaaaaccctgatcttaaattttaaaaagaatgtatcacatcagt-ggaaaaaagccagatgtggaaatattg-----ctatcacatcagtt |
24478590 |
T |
|
| Q |
397 |
cgt-cccgatgtaaaatgacgtggacataccacataatgtcacctcatatcggttgccacatgatgtgaaaagta |
470 |
Q |
| |
|
||| || ||||| |||||||||| |||| |||||| ||| ||||| | ||| ||||||| |||||||||||||| |
|
|
| T |
24478591 |
cgtacctgatgtgaaatgacgtgcacattccacatcatgacaccttacatcagttgccatctgatgtgaaaagta |
24478665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 295 - 377
Target Start/End: Original strand, 39295671 - 39295752
Alignment:
| Q |
295 |
acaactgatgtgaaaaccctgatgttaaattttaaagagaaggtataacatcagtgggtgaaaggcccgatgtggaaagtttg |
377 |
Q |
| |
|
||||||||||| ||| || |||| ||||||||||||||||| |||| ||||||||||| ||||||| |||||||||| |||| |
|
|
| T |
39295671 |
acaactgatgtaaaacccgtgatcttaaattttaaagagaacgtatcacatcagtggg-aaaaggccggatgtggaaaatttg |
39295752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 295 - 471
Target Start/End: Complemental strand, 8356053 - 8355882
Alignment:
| Q |
295 |
acaactgatgtgaaaaccctgatgttaaattttaaagagaaggtataacatcagtgggtgaaaggcccgatgtggaaagtttgatatactgtaacaacag |
394 |
Q |
| |
|
||||||||||| ||| | |||| ||||||||||||||||| ||| ||||||||||| ||||||| |||||||||| |||| || | ||| ||| |
|
|
| T |
8356053 |
acaactgatgtaaaactcgtgatcttaaattttaaagagaacatatcacatcagtggg-aaaaggccggatgtggaaaatttgtta-----tcacatcag |
8355960 |
T |
|
| Q |
395 |
ttcgt-cccgatgtaaaatgacgtggacataccacataatgtcacctcatatcggttgccacatgatgtgaaaagtac |
471 |
Q |
| |
|
||||| || ||||| |||||| || |||||||||||| || |||| | | ||||| || || ||||||||||||||| |
|
|
| T |
8355959 |
ttcgtacctgatgtgaaatgatgttgacataccacatcatatcactttacatcggacgctacctgatgtgaaaagtac |
8355882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University