View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_38 (Length: 472)
Name: NF19175_low_38
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 27 - 271
Target Start/End: Complemental strand, 41234376 - 41234130
Alignment:
| Q |
27 |
tttcttagcaattaaggaaatatattgaagttaggaaatagatagaactattgattagtcnnnnnnnnnngttgggaaatacagtcaacaaaagatatag |
126 |
Q |
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| T |
41234376 |
tttcttagcaattaaggaaatatattaaagttaggaaatagatagaactattgattagtcaaaaaaaa--gttgggaaatacagtcaacaaaagatatag |
41234279 |
T |
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| Q |
127 |
atgaaaaatatatatgaaaattttgagtaacttctcagtttttctcactaaatttattgacgaaatgacgagacattagtggcgatttcaattttttaat |
226 |
Q |
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| T |
41234278 |
atgaaaaatatatatgaaaattttgagtaacttctcagtttttctcactaaatttattgacgaaatgacgagacattagtggcgatttcaattttttaat |
41234179 |
T |
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| Q |
227 |
cccctacaaaatctctaattggccac----tctcattaaggtttataag |
271 |
Q |
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| T |
41234178 |
cccctacaaaatctctaattggccactctctctcattaaggtttataag |
41234130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 356 - 421
Target Start/End: Complemental strand, 41234047 - 41233982
Alignment:
| Q |
356 |
ggtaataaccaacacatacaatgtaaattttatacgttcaaatagagtaatagaatatcctaattt |
421 |
Q |
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| T |
41234047 |
ggtaataaccaacacatacaatgtaaattttatacgttcaaatagagtaatagaatatcctaattt |
41233982 |
T |
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