View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19175_low_41 (Length: 457)

Name: NF19175_low_41
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19175_low_41
NF19175_low_41
[»] chr1 (10 HSPs)
chr1 (223-398)||(50321998-50322173)
chr1 (13-151)||(50321788-50321926)
chr1 (260-332)||(34374137-34374209)
chr1 (399-447)||(50322206-50322254)
chr1 (266-332)||(7991518-7991584)
chr1 (255-333)||(15606323-15606401)
chr1 (255-333)||(28067478-28067556)
chr1 (265-373)||(22925211-22925320)
chr1 (255-295)||(3032174-3032214)
chr1 (255-315)||(8344566-8344626)
[»] chr5 (3 HSPs)
chr5 (257-308)||(18899231-18899282)
chr5 (255-325)||(20981259-20981329)
chr5 (255-333)||(39159729-39159807)
[»] chr6 (2 HSPs)
chr6 (255-333)||(2732925-2733003)
chr6 (266-380)||(430981-431096)
[»] chr4 (2 HSPs)
chr4 (259-324)||(33714230-33714295)
chr4 (339-380)||(38596788-38596829)
[»] chr2 (5 HSPs)
chr2 (250-333)||(11530013-11530096)
chr2 (255-330)||(44458225-44458300)
chr2 (255-289)||(33525030-33525064)
chr2 (255-296)||(8818257-8818298)
chr2 (252-285)||(34786621-34786654)
[»] chr7 (4 HSPs)
chr7 (256-290)||(22550050-22550084)
chr7 (252-285)||(1668360-1668393)
chr7 (339-380)||(34925277-34925318)
chr7 (281-333)||(21451518-21451570)
[»] chr3 (4 HSPs)
chr3 (255-324)||(10275821-10275891)
chr3 (255-324)||(54842199-54842268)
chr3 (255-307)||(18403365-18403417)
chr3 (265-333)||(35303946-35304014)
[»] chr8 (2 HSPs)
chr8 (265-333)||(30560087-30560156)
chr8 (264-324)||(45371101-45371161)


Alignment Details
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 223 - 398
Target Start/End: Original strand, 50321998 - 50322173
Alignment:
Q  223 agcagtgttgtcaaataacggttatcctgttgtagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaa 322  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  50321998 agcagtgttgtcaaatagcggttatcctgttgtagcatagtggaatttgaacaaaccactattgttctacgatacacaatttagtataaaatattgtcaa 50322097  T
Q  323 attgcagctatgatgtgctatagcattgtaccgtagcagaatttaaacaaactgctatcttaatgatatgcgattg 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  50322098 attgcagctatgatgtgctatagcattgtaccgtagcagaatttaaacaaactgctatttgaatgatatgcgattg 50322173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 50321788 - 50321926
Alignment:
Q  13 aaaatgttcttgtcagtaggtattgtttttatttcattctgaattctctactatcatcttcttatttagatgctatttttctctcaatactttcctttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50321788 aaaatgttcttgtcagtaggtattgtttttatttcattctgaattctctactatcatcttcttatttagatgctatttttctctcaatactttcctttct 50321887  T
Q  113 tgtagcttgtaatatcgtaatctattaaaataataataa 151  Q
    |||||||||||||||||||||||||||||||||||||||    
T  50321888 tgtagcttgtaatatcgtaatctattaaaataataataa 50321926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 34374209 - 34374137
Alignment:
Q  260 tagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaattgcagcta 332  Q
    |||||||||||||||| || |||||||||||| |||| || |||| ||| ||||| |||||||||||||||||    
T  34374209 tagtggaatttgaacagactactattgttctatgatacgcgatttggtacaaaatgttgtcaaattgcagcta 34374137  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 447
Target Start/End: Original strand, 50322206 - 50322254
Alignment:
Q  399 tgtggtgtctgcccatggactagttctgcatttaagttgaagttttcat 447  Q
    ||||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  50322206 tgtggtgtccgcccatggactagttctgcgtttaagttgaaattttcat 50322254  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 332
Target Start/End: Original strand, 7991518 - 7991584
Alignment:
Q  266 aatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaattgcagcta 332  Q
    ||||||||||||||||||||||||   |||| || |||||||| | |||||||| |||| |||||||    
T  7991518 aatttgaacaaaccactattgttccgtgatacgccatttagtacataatattgtgaaatagcagcta 7991584  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 333
Target Start/End: Complemental strand, 15606401 - 15606323
Alignment:
Q  255 tagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaattgcagctat 333  Q
    |||||| ||| ||||| |||||| |||||||||||| | ||| || |||||||| ||||| |||||||||  |||||||    
T  15606401 tagcattgtgaaatttaaacaaatcactattgttctgctatatgctatttagtacaaaatgttgtcaaataacagctat 15606323  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 333
Target Start/End: Original strand, 28067478 - 28067556
Alignment:
Q  255 tagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaattgcagctat 333  Q
    |||||||| |||||||||  ||| |||| ||||| | ||||| |  |||| ||||||||||||||| ||||||||||||    
T  28067478 tagcataggggaatttgatgaaatcactgttgttttgcgatatgttatttggtataaaatattgtcgaattgcagctat 28067556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 373
Target Start/End: Complemental strand, 22925320 - 22925211
Alignment:
Q  265 gaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaattgcagctat-gatgtgctatagcattgtaccgtagcagaa 363  Q
    |||||| |||||||||||||||||| |||||| | ||| || || ||| ||||||||| | |||||||| |  |  |||||||| | || ||||||||||    
T  22925320 gaattttaacaaaccactattgttccacgatacgtaatctaatacaaagtattgtcaagtagcagctatagcagctctatagcaatatagcgtagcagaa 22925221  T
Q  364 tttaaacaaa 373  Q
    ||| ||||||    
T  22925220 tttgaacaaa 22925211  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 3032214 - 3032174
Alignment:
Q  255 tagcatagtggaatttgaacaaaccactattgttctacgat 295  Q
    |||| |||||||||||||||||||| ||||||||| |||||    
T  3032214 tagcgtagtggaatttgaacaaacccctattgttccacgat 3032174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 8344566 - 8344626
Alignment:
Q  255 tagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaata 315  Q
    ||||||||  ||||||||||||||||||||| ||| || ||| || |||||||| ||||||    
T  8344566 tagcatagcagaatttgaacaaaccactatttttccacaataagctatttagtacaaaata 8344626  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 308
Target Start/End: Complemental strand, 18899282 - 18899231
Alignment:
Q  257 gcatagtggaatttgaacaaaccactattgttctacgataggcaatttagta 308  Q
    |||||||||||||| ||||||||||||||||||| ||||| |||||||||||    
T  18899282 gcatagtggaattttaacaaaccactattgttctgcgatacgcaatttagta 18899231  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 255 - 325
Target Start/End: Original strand, 20981259 - 20981329
Alignment:
Q  255 tagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaatt 325  Q
    |||||||  ||||||||||| || |||||||||||| | ||| || |||||||||||||||||||||||||    
T  20981259 tagcataaaggaatttgaactaatcactattgttctgcaatacgctatttagtataaaatattgtcaaatt 20981329  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 333
Target Start/End: Complemental strand, 39159807 - 39159729
Alignment:
Q  255 tagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaattgcagctat 333  Q
    |||| ||| ||||||| |||||||||||||||||||  |||| ||||||||||| |||   ||| ||||| ||||||||    
T  39159807 tagcgtagcggaattttaacaaaccactattgttctgtgatatgcaatttagtacaaagcgttgacaaatagcagctat 39159729  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 333
Target Start/End: Original strand, 2732925 - 2733003
Alignment:
Q  255 tagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaattgcagctat 333  Q
    |||| ||||| |||||||||||| | |||||||| | ||||| || |||||||| ||||| ||||||||| ||||||||    
T  2732925 tagcgtagtgaaatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaatagcagctat 2733003  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 380
Target Start/End: Original strand, 430981 - 431096
Alignment:
Q  266 aatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaattgcagctat-gatgtgctatagcattgtaccgtagcagaat 364  Q
    |||||||||||| ||||||||||| |  |||  | | |||||| |||||||||| |||| || ||||| |||| ||||||||| |||  |||||||||||    
T  430981 aatttgaacaaatcactattgttccattataaactacttagtacaaaatattgttaaatagcggctatagatgcgctatagcactgttgcgtagcagaat 431080  T
Q  365 ttaaacaaactgctat 380  Q
    || ||  |||||||||    
T  431081 ttgaatgaactgctat 431096  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 33714295 - 33714230
Alignment:
Q  259 atagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaat 324  Q
    ||||||||||||||||||| | || |||||| |||||| || |||||||| |||||||||| ||||    
T  33714295 atagtggaatttgaacaaatcgctgttgttccacgataagccatttagtacaaaatattgtgaaat 33714230  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 38596788 - 38596829
Alignment:
Q  339 gctatagcattgtaccgtagcagaatttaaacaaactgctat 380  Q
    ||||||||| |||| ||||||||||||| |||||||||||||    
T  38596788 gctatagcactgtaacgtagcagaatttgaacaaactgctat 38596829  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 333
Target Start/End: Original strand, 11530013 - 11530096
Alignment:
Q  250 tgttgtagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaattgcagctat 333  Q
    |||||| |||||| | |||||||||||| |||||||||||| |||||  | |||||||| | |||||||| |||| || |||||    
T  11530013 tgttgttgcatagcgaaatttgaacaaatcactattgttctgcgatacactatttagtacataatattgtgaaatagcggctat 11530096  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 330
Target Start/End: Complemental strand, 44458300 - 44458225
Alignment:
Q  255 tagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaattgcagc 330  Q
    ||||||||||||||| ||||||||| |||||||||  |||||    |||||||| ||| ||||||||||| |||||    
T  44458300 tagcatagtggaattcgaacaaaccgctattgttccgcgatacaatatttagtacaaagtattgtcaaatagcagc 44458225  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 289
Target Start/End: Complemental strand, 33525064 - 33525030
Alignment:
Q  255 tagcatagtggaatttgaacaaaccactattgttc 289  Q
    ||||||||||||||||| |||||||||||||||||    
T  33525064 tagcatagtggaatttggacaaaccactattgttc 33525030  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 8818298 - 8818257
Alignment:
Q  255 tagcatagtggaatttgaacaaaccactattgttctacgata 296  Q
    |||||||| |||||||||||||||| |||| |||||||||||    
T  8818298 tagcatagcggaatttgaacaaacctctatagttctacgata 8818257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 285
Target Start/End: Complemental strand, 34786654 - 34786621
Alignment:
Q  252 ttgtagcatagtggaatttgaacaaaccactatt 285  Q
    ||||||||||||| ||||||||||||||||||||    
T  34786654 ttgtagcatagtgaaatttgaacaaaccactatt 34786621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 290
Target Start/End: Original strand, 22550050 - 22550084
Alignment:
Q  256 agcatagtggaatttgaacaaaccactattgttct 290  Q
    ||||||||||||| |||||||||||||||||||||    
T  22550050 agcatagtggaatctgaacaaaccactattgttct 22550084  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 285
Target Start/End: Complemental strand, 1668393 - 1668360
Alignment:
Q  252 ttgtagcatagtggaatttgaacaaaccactatt 285  Q
    |||||||||||||||||||||||||||| |||||    
T  1668393 ttgtagcatagtggaatttgaacaaaccgctatt 1668360  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 34925318 - 34925277
Alignment:
Q  339 gctatagcattgtaccgtagcagaatttaaacaaactgctat 380  Q
    |||||||||||||| | ||||||||||| |||||||||||||    
T  34925318 gctatagcattgtagcatagcagaatttgaacaaactgctat 34925277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 21451570 - 21451518
Alignment:
Q  281 ctattgttctacgataggcaatttagtataaaatattgtcaaattgcagctat 333  Q
    |||||||||| ||||| ||||||||||| ||||| ||||||||| || |||||    
T  21451570 ctattgttctgcgatacgcaatttagtacaaaatcttgtcaaatagcggctat 21451518  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 10275891 - 10275821
Alignment:
Q  255 tagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagta-taaaatattgtcaaat 324  Q
    ||||||||||||||||||||||| || | ||||||| ||||| || ||||| ||  |||||||||||||||    
T  10275891 tagcatagtggaatttgaacaaatcattgttgttctgcgatatgctatttattacaaaaatattgtcaaat 10275821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 54842268 - 54842199
Alignment:
Q  255 tagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaat 324  Q
    |||||||| |||||||  | ||||| ||||||||||  |||| || |||||||||||||| |||||||||    
T  54842268 tagcatagcggaatttagagaaaccgctattgttctgtgatacgctatttagtataaaatgttgtcaaat 54842199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 18403417 - 18403365
Alignment:
Q  255 tagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagt 307  Q
    |||||||| ||||||| ||||||||||||||||| | |||||  |||||||||    
T  18403417 tagcatagcggaattttaacaaaccactattgttttgcgatacacaatttagt 18403365  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 35304014 - 35303946
Alignment:
Q  265 gaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaattgcagctat 333  Q
    ||||||||| ||| |||||||||||| | |||  | |||||||| |||| ||||||||||||| |||||    
T  35304014 gaatttgaaaaaatcactattgttctcccatacactatttagtacaaaacattgtcaaattgcggctat 35303946  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 30560087 - 30560156
Alignment:
Q  265 gaatttgaacaaaccactattgttctacgataggcaatttagt-ataaaatattgtcaaattgcagctat 333  Q
    ||||||| |||||||||||||||| | |||||  | ||||||| | ||||| ||||||||||||||||||    
T  30560087 gaatttggacaaaccactattgttttgcgatacactatttagtaaaaaaatgttgtcaaattgcagctat 30560156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 324
Target Start/End: Complemental strand, 45371161 - 45371101
Alignment:
Q  264 ggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaat 324  Q
    |||||||| |||||||||||||||||  | ||| || |||||||| ||||| |||||||||    
T  45371161 ggaatttggacaaaccactattgttccgcaatatgctatttagtacaaaatgttgtcaaat 45371101  T

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