View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19175_low_42 (Length: 435)
Name: NF19175_low_42
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_42 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 13041519 - 13041941
Alignment:
| Q |
1 |
cacttggaattggaagagatgatggtgtaggtgatgaagaacttgttgtagcagttgtcttactttgtcaatctcagaaaatcaaccacatgctgaaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13041519 |
cacttggaattggaagagatgatggtgtaggtgatgaagaacttgttgcagcagttgtcttactttgtcaatctcagaaaatcaaccacacgctgaaagt |
13041618 |
T |
|
| Q |
101 |
gcagctcttcaccacactgctgcttgatataaaattttggagtttatgtagttatggaatacaaaagaagcttctatcatcacttgctgacatggttttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13041619 |
gcagctcttcaccacactgctgcttgatataaaattttggagtttatgtagttatggaatacaaaagaagcttctatcatcacttgctgacatggttttc |
13041718 |
T |
|
| Q |
201 |
accgagtctgcagtgatgcgagatgccaatgccattcagatgcttcttgatggctgcagaagatgttactggactgttcctgaaaaggatccaggaaata |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13041719 |
accgagtctgaagtgatgcgagatgccaatgccattcagatgcttcttgatggctgcagaagatgttactggactgttcctgaaaaggatccaggaaata |
13041818 |
T |
|
| Q |
301 |
ccgttcctctaactggaggaagaagaccagtgggcgaagtcaatgctttggttgacgagctcttggtggtgattgaacttctaatagtagcagcatctcc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13041819 |
ccgttcctctaactggaggaagaagaccagtgggcgaagtcaatgctttggttgacgagctcttggtggtgattgaacttctaatagtagcagcatctcc |
13041918 |
T |
|
| Q |
401 |
ttcattggtctctgatgatgtcc |
423 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
13041919 |
ttcattggtctccgatgatgtcc |
13041941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 27 - 423
Target Start/End: Complemental strand, 28376579 - 28376183
Alignment:
| Q |
27 |
gtaggtgatgaagaacttgttgtagcagttgtcttactttgtcaatctcagaaaatcaaccacatgctgaaagtgcagctcttcaccacactgctgcttg |
126 |
Q |
| |
|
||||| ||||| |||||||||| || ||||| | |||||||||||||||| |||||||| | || ||||||||||||||| ||||||||||| | | |
|
|
| T |
28376579 |
gtaggagatgaggaacttgttgctgctgttgtttctgtttgtcaatctcagaagatcaaccatacacttaaagtgcagctcttcgccacactgctgttag |
28376480 |
T |
|
| Q |
127 |
atataaaattttggagtttatgtagttatggaatacaaaagaagcttctatcatcacttgctgacatggttttcaccgagtctgcagtgatgcgagatgc |
226 |
Q |
| |
|
|| ||||| | |||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||| ||||| |
|
|
| T |
28376479 |
atttaaaaatctggagtttgtgtagttatggcatacaaaagaagcttctatcatcacttgcagacatggttttcactgagtcaacagtaatgcgtgatgc |
28376380 |
T |
|
| Q |
227 |
caatgccattcagatgcttcttgatggctgcagaagatgttactggactgttcctgaaaaggatccaggaaataccgttcctctaactggaggaagaaga |
326 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||| |||| ||||| ||||| ||| ||| || | || || || |||| | || | | |
|
|
| T |
28376379 |
caatgccattcaaatgcttcttgatggctgcagacgatgttattggattgttcgtgaaattgattcagtggattctttttctttagctggggcaacacgt |
28376280 |
T |
|
| Q |
327 |
ccagtgggcgaagtcaatgctttggttgacgagctcttggtggtgattgaacttctaatagtagcagcatctccttcattggtctctgatgatgtcc |
423 |
Q |
| |
|
|| ||||| ||| | ||||| ||||||||||||||||| ||||| |||||||| ||||||| ||||| ||||||| |||||||| | |||||||| |
|
|
| T |
28376279 |
cctgtgggtgaaattaatgcattggttgacgagctcttagtggtagttgaacttttaatagtggcagctcctccttcgttggtctcagctgatgtcc |
28376183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University