View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19175_low_43 (Length: 433)
Name: NF19175_low_43
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_43 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 23910757 - 23911170
Alignment:
| Q |
1 |
aagtgttgttagaatcaagcatggagaataaaaacattccctcttacacacatatatgaa-------ttttatttcataaaattgtctatagatttcaat |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23910757 |
aagtgttgttagaatcaagcatggagaataaa--cattccctgttacacacatatatgatatatgagttttatttcataaaattgtctatagatttcaat |
23910854 |
T |
|
| Q |
94 |
actaggttgatagatgagttggttttgaatcatttcaaaccaaagatcaaattgttattttatttttaactatttgatacattttgatttctattggtgt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23910855 |
actaggttgatagatgagttggttttgaatcatttcaaaccaaagatcaaattgttattttatttttaactatttgatacattttgatttctattggtgt |
23910954 |
T |
|
| Q |
194 |
tttgcatacaatgtgtgttgcatcaaattggtgcctttgtagatacaagatcttcaacaagtataatgaatccaacaaatgatgtccttgtgccccaact |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||| |||| ||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
23910955 |
tttgcatacaatgtgtgttgcatcaaattggcgcctttgcagatacaagagcttctacaagtataatgaatacaaaaaatgatgtccttgtgccccaact |
23911054 |
T |
|
| Q |
294 |
agcaattagagacaaaaataccattttgggtgcatatgacctattaaaggtcatggtaatggagcctataggttgtaataactattatgagtatctcaat |
393 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23911055 |
agcaattcgagacaaaaataccattttgggtgcatatgacctattaaaggtc------atggagcctataggttataataactattatgagtatctcaat |
23911148 |
T |
|
| Q |
394 |
ttttatctttcgttatagtaat |
415 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
23911149 |
ttttatctttcgttatagtaat |
23911170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 25082063 - 25082139
Alignment:
| Q |
61 |
ttttatttcataaaattgtctatagatttcaatactaggttgatagatgagttggttttgaatcatttcaaaccaaa |
137 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||| |||||| ||||||| |
|
|
| T |
25082063 |
ttttctttcataaaaatgtctctagatttcaatactaggttgatagatatgttgggtttgagtcattttcaaccaaa |
25082139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University