View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19175_low_45 (Length: 432)

Name: NF19175_low_45
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19175_low_45
NF19175_low_45
[»] chr6 (24 HSPs)
chr6 (19-427)||(27772231-27772640)
chr6 (75-125)||(20148387-20148437)
chr6 (75-125)||(22184391-22184441)
chr6 (75-120)||(19305536-19305581)
chr6 (22-114)||(8006935-8007028)
chr6 (63-127)||(9277268-9277333)
chr6 (63-120)||(9291994-9292052)
chr6 (75-120)||(11087574-11087619)
chr6 (75-120)||(15480315-15480360)
chr6 (75-120)||(18147378-18147423)
chr6 (64-120)||(22692152-22692209)
chr6 (75-118)||(22572116-22572159)
chr6 (86-120)||(9403255-9403289)
chr6 (86-120)||(14184530-14184564)
chr6 (78-120)||(16131043-16131085)
chr6 (86-120)||(19277050-19277084)
chr6 (86-120)||(19730565-19730599)
chr6 (86-120)||(34064278-34064312)
chr6 (75-129)||(34572959-34573013)
chr6 (75-120)||(10115659-10115704)
chr6 (75-120)||(17380169-17380214)
chr6 (75-120)||(30681064-30681109)
chr6 (76-120)||(31423811-31423855)
chr6 (80-120)||(33596938-33596978)
[»] chr4 (12 HSPs)
chr4 (26-120)||(50151778-50151874)
chr4 (56-116)||(3642984-3643044)
chr4 (75-120)||(19643774-19643819)
chr4 (75-120)||(47253349-47253394)
chr4 (75-116)||(12683857-12683898)
chr4 (75-119)||(2674549-2674593)
chr4 (73-120)||(5518610-5518657)
chr4 (86-120)||(1638292-1638326)
chr4 (74-116)||(13171136-13171178)
chr4 (86-120)||(15514535-15514569)
chr4 (75-120)||(29157174-29157219)
chr4 (86-122)||(14601987-14602023)
[»] chr5 (12 HSPs)
chr5 (27-88)||(8778905-8778968)
chr5 (75-120)||(26994580-26994625)
chr5 (63-120)||(8938970-8939028)
chr5 (75-117)||(20025355-20025397)
chr5 (75-119)||(22903165-22903209)
chr5 (77-120)||(32418460-32418503)
chr5 (64-129)||(4477257-4477323)
chr5 (86-120)||(22865844-22865878)
chr5 (86-120)||(26348065-26348099)
chr5 (86-120)||(31202349-31202383)
chr5 (75-119)||(25333807-25333851)
chr5 (75-115)||(34493585-34493625)
[»] chr1 (11 HSPs)
chr1 (26-200)||(46016133-46016298)
chr1 (75-202)||(8019020-8019144)
chr1 (75-120)||(34273159-34273204)
chr1 (73-117)||(2140925-2140969)
chr1 (75-118)||(52565652-52565695)
chr1 (86-120)||(21098820-21098854)
chr1 (75-120)||(16030467-16030512)
chr1 (75-120)||(16050466-16050511)
chr1 (75-120)||(22414847-22414892)
chr1 (79-120)||(26977816-26977857)
chr1 (63-118)||(18246201-18246257)
[»] scaffold0054 (1 HSPs)
scaffold0054 (75-125)||(68771-68821)
[»] chr3 (14 HSPs)
chr3 (75-125)||(9801053-9801103)
chr3 (75-120)||(16704474-16704519)
chr3 (75-119)||(20622480-20622524)
chr3 (75-116)||(8122893-8122934)
chr3 (63-120)||(30429875-30429932)
chr3 (78-116)||(2311812-2311850)
chr3 (75-120)||(21342261-21342306)
chr3 (75-120)||(30607000-30607045)
chr3 (86-125)||(12108502-12108541)
chr3 (86-120)||(14860073-14860107)
chr3 (86-120)||(20118951-20118985)
chr3 (75-117)||(28715465-28715507)
chr3 (87-119)||(12731536-12731568)
chr3 (75-119)||(17143724-17143768)
[»] scaffold0291 (1 HSPs)
scaffold0291 (75-120)||(15404-15449)
[»] chr2 (14 HSPs)
chr2 (75-120)||(3586435-3586480)
chr2 (75-120)||(36267570-36267615)
chr2 (75-120)||(45258126-45258171)
chr2 (65-120)||(23257842-23257898)
chr2 (69-120)||(147236-147287)
chr2 (75-117)||(24499861-24499903)
chr2 (86-120)||(15390559-15390593)
chr2 (86-120)||(29711099-29711133)
chr2 (57-99)||(41501070-41501111)
chr2 (75-120)||(12169045-12169090)
chr2 (64-120)||(17672032-17672088)
chr2 (87-120)||(18772332-18772365)
chr2 (75-120)||(19919040-19919085)
chr2 (86-119)||(24157281-24157314)
[»] scaffold0360 (1 HSPs)
scaffold0360 (76-120)||(13995-14039)
[»] chr7 (8 HSPs)
chr7 (75-126)||(9135329-9135380)
chr7 (75-120)||(26762885-26762930)
chr7 (75-120)||(5863259-5863304)
chr7 (79-120)||(29373522-29373563)
chr7 (75-120)||(43172010-43172055)
chr7 (86-120)||(4781474-4781508)
chr7 (86-120)||(4813905-4813939)
chr7 (75-120)||(16203794-16203839)
[»] scaffold0023 (1 HSPs)
scaffold0023 (75-125)||(95779-95829)
[»] chr8 (11 HSPs)
chr8 (75-120)||(18323015-18323060)
chr8 (75-120)||(30477713-30477758)
chr8 (77-120)||(23497137-23497180)
chr8 (74-120)||(23269305-23269351)
chr8 (76-120)||(5859888-5859932)
chr8 (132-227)||(7362743-7362839)
chr8 (75-125)||(13754830-13754880)
chr8 (86-119)||(4565368-4565401)
chr8 (75-120)||(17319606-17319651)
chr8 (75-120)||(17698259-17698304)
chr8 (75-120)||(24507529-24507574)
[»] scaffold0096 (1 HSPs)
scaffold0096 (86-120)||(42331-42365)
[»] scaffold0013 (1 HSPs)
scaffold0013 (86-120)||(4398-4432)
[»] scaffold0479 (1 HSPs)
scaffold0479 (87-120)||(5122-5155)
[»] scaffold0101 (1 HSPs)
scaffold0101 (75-120)||(10705-10750)
[»] scaffold0012 (1 HSPs)
scaffold0012 (75-120)||(149218-149263)
[»] scaffold0005 (1 HSPs)
scaffold0005 (86-122)||(215355-215391)


Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 27772640 - 27772231
Alignment:
Q  19 agtacttcgacgatcaaatcagtatgaaaaatgagaggtgtgtaaaaaagtgtgggaaagtgaatcataccttgagggtgaagcaaggtcacccttatat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27772640 agtacttcgacgatcaaatcagtatgaaaaatgagaggtgtgtaaaaaagtgtgggaaagtgaatcataccttgaaggtgaagcaaggtcacccttatat 27772541  T
Q  119 agccacgtgtgtggagtaaccgtctctgtgtgatgtggcgccttatcaggggtctgttgagggacacgtgtacggtgcttgatgcactagggcgcgtcca 218  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  27772540 aggcacgtgtgtggagtaaccgtctctgtgtgatgtggcgccttatcaggggtctgttgagggacacgtgtacggtgcttgatgcactggggcgcatcca 27772441  T
Q  219 gtgaggtaggacataccgttgctaacatggtccctcaagcgatgcgccttaggtcggtggatgttttaacccacgtgtcattacgggactgaccttctga 318  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27772440 gtgaggtaggacgtaccgttgctaacatggtccctcaagcgatgcgccttaggtcggtggatgttttaacccacgtgtcattacgggactgaccttctaa 27772341  T
Q  319 ccagtctgaaacaaaatgaattcgttcc-ttattttttctttgattggaggaaccgggcgtagcaaagtgagtagtataaaaattgtacgagtagtttaa 417  Q
    || ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27772340 ccggtctgaaacaaaatgaattcgttcctttattttttctttgatcggaggaaccgggcgtagcaaagtgagtagtataaaaattgtacgagtagtttaa 27772241  T
Q  418 ataaggtaca 427  Q
    ||||||||||    
T  27772240 ataaggtaca 27772231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 20148387 - 20148437
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatagccacg 125  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  20148387 aaagtgaatcataccttgatggtgaagcaaggtcacccttatataggcacg 20148437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 22184441 - 22184391
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatagccacg 125  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  22184441 aaagtgaatcataccttgatggtgaagcaaggtcacccttatataggcacg 22184391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 19305536 - 19305581
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  19305536 aaagtgaatcataccttgagggtgaagcaaggtcacccttaaatag 19305581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 8007028 - 8006935
Alignment:
Q  22 acttcgacgatcaaatcagtatgaaaaatgagagg-tgtgtaaaaaagtgtgggaaagtgaatcataccttgagggtgaagcaaggtcaccctt 114  Q
    |||| ||||||||| ||| ||||| |||||||||  ||||||| |||||||||||||  ||||||||| ||| ||||||||| | |||||||||    
T  8007028 actttgacgatcaagtcaatatgagaaatgagagaatgtgtaagaaagtgtgggaaaaggaatcatacattgggggtgaagctaagtcaccctt 8006935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 9277333 - 9277268
Alignment:
Q  63 aaaaagtgtgg-gaaagtgaatcataccttgagggtgaagcaaggtcacccttatatagccacgtg 127  Q
    ||||||||||| ||||||||||||||||||||||||||||| |  ||||||||||| || ||||||    
T  9277333 aaaaagtgtggagaaagtgaatcataccttgagggtgaagctaactcacccttatacaggcacgtg 9277268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 9292052 - 9291994
Alignment:
Q  63 aaaaagtgtgggaaa-gtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||||||||| ||||||||||||||||||||||||| |  ||||| ||||||||    
T  9292052 aaaaagtgtgggaaaagtgaatcataccttgagggtgaagctaactcacctttatatag 9291994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 11087574 - 11087619
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||||||||||||||| |||| |||| ||||||||||||||    
T  11087574 aaagtgaatcataccttgaggatgaaacaagttcacccttatatag 11087619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 15480360 - 15480315
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||| ||||||| | |||||||||||||||    
T  15480360 aaagtgaatcataccttgagagtgaagctaagtcacccttatatag 15480315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 18147378 - 18147423
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||| ||||||||| |||||||||||| |||||||||||||||    
T  18147378 aaagtgactcatacctttagggtgaagcaatgtcacccttatatag 18147423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 22692152 - 22692209
Alignment:
Q  64 aaaagtgtgggaaa-gtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||| |||||||||| |||||||||||||| | |||||| ||||||||    
T  22692152 aaaagtgtgggaaaagtgaatcataacttgagggtgaagctaagtcacctttatatag 22692209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 22572116 - 22572159
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatat 118  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||||    
T  22572116 aaagtgaatcatatcttgagggtgaagcaagttcacctttatat 22572159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 9403255 - 9403289
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||| ||||||||||||||    
T  9403255 taccttgagggtgaagcaagttcacccttatatag 9403289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 14184564 - 14184530
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||| ||||||||||||||    
T  14184564 taccttgagggtgaagcaagttcacccttatatag 14184530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 16131043 - 16131085
Alignment:
Q  78 gtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||||||||||||||||| |||| | ||||||||||||    
T  16131043 gtgaatcataccttgagggtgaaacaagtttacccttatatag 16131085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 19277084 - 19277050
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||| ||||||||||||||    
T  19277084 taccttgagggtgaagcaagttcacccttatatag 19277050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 19730599 - 19730565
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||| ||||||||||||||    
T  19730599 taccttgagggtgaagcaagttcacccttatatag 19730565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 34064278 - 34064312
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||| ||||||||||||||    
T  34064278 taccttgagggtgaagcaagttcacccttatatag 34064312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 34573013 - 34572959
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatagccacgtgtg 129  Q
    |||||||||||||| ||||||||||||  | ||||||||||||||| | ||||||    
T  34573013 aaagtgaatcatacattgagggtgaagttaagtcacccttatataggcgcgtgtg 34572959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 10115704 - 10115659
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||| ||||||||||| | |||| ||||||||||    
T  10115704 aaagtgaatcatacctcgagggtgaagctaagtcagccttatatag 10115659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 17380169 - 17380214
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||| |||||| ||| ||| ||||||||||||||||||||    
T  17380169 aaagtgaatcttaccttcaggttgacgcaaggtcacccttatatag 17380214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 30681064 - 30681109
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||||||||||||||| |||||||| |||||| ||| ||||    
T  30681064 aaagtgaatcataccttgaggatgaagcaatgtcacctttagatag 30681109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 31423855 - 31423811
Alignment:
Q  76 aagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||  |||||||||||||||||  |||||||||||||    
T  31423855 aagtgaatcatgtcttgagggtgaagcaagtgcacccttatatag 31423811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 33596938 - 33596978
Alignment:
Q  80 gaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||| ||||||||| |||| |||||||||    
T  33596938 gaatcataccttgaggatgaagcaagttcactcttatatag 33596978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 50151874 - 50151778
Alignment:
Q  26 cgacgatcaaatcagtatgaaaaatgagagg--tgtgtaaaaaagtgtgggaaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||  ||||||| | ||||||||||  |||||||  ||| |||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  50151874 cgacgatcatgtcagtataagaaatgagaggagtgtgtaaggaagcgtgggaaagtaaatcataccttgagggtgaagcaaagtcacccttatatag 50151778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 3643044 - 3642984
Alignment:
Q  56 gtgtgtaaaaaagtgtgggaaagtgaatcataccttgagggtgaagcaaggtcacccttat 116  Q
    |||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  3643044 gtgtgtaagaaagtgtgggaaagtgaatcatatcttgagggtgaatcaaggtcacccttat 3642984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 19643774 - 19643819
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||    
T  19643774 aaagtgaatcataccttgagggtgaaacaagttcacccttatatag 19643819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 47253349 - 47253394
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||||||||||| | |||||||||||||||    
T  47253349 aaagtgaatcataccttgagggtgaagctaagtcacccttatatag 47253394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 12683857 - 12683898
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttat 116  Q
    ||||||||||||||||| ||||||||||||| ||||||||||    
T  12683857 aaagtgaatcataccttaagggtgaagcaagttcacccttat 12683898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 2674593 - 2674549
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatata 119  Q
    ||||||||||||||||||||| ||||| ||| |||||||||||||    
T  2674593 aaagtgaatcataccttgaggatgaagtaagttcacccttatata 2674549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 5518610 - 5518657
Alignment:
Q  73 ggaaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||  | |||||||||||||||||||| ||||||||||||||    
T  5518610 ggaaagtgatgcgtaccttgagggtgaagcaagttcacccttatatag 5518657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 1638326 - 1638292
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||| ||||||||||||||    
T  1638326 taccttgagggtgaagcaagttcacccttatatag 1638292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 13171136 - 13171178
Alignment:
Q  74 gaaagtgaatcataccttgagggtgaagcaaggtcacccttat 116  Q
    |||||||||||||||| |||||||||| ||| |||||||||||    
T  13171136 gaaagtgaatcataccgtgagggtgaatcaatgtcacccttat 13171178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 15514569 - 15514535
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||| ||||||||||||||    
T  15514569 taccttgagggtgaagcaagttcacccttatatag 15514535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 29157174 - 29157219
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||| |||||||||| ||||||| ||| ||||||||||||||    
T  29157174 aaagtgaaccataccttgatggtgaagtaagttcacccttatatag 29157219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 14602023 - 14601987
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatatagcc 122  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  14602023 taccttgagggtgaagcaagttcatccttatatagcc 14601987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 8778905 - 8778968
Alignment:
Q  27 gacgatcaaatcagtatgaaaaatgagag--gtgtgtaaaaaagtgtgggaaagtgaatcatac 88  Q
    ||||||||||||||||||| |||||||||  |||||||| ||||||||||||||||||||||||    
T  8778905 gacgatcaaatcagtatgagaaatgagagaagtgtgtaagaaagtgtgggaaagtgaatcatac 8778968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 26994625 - 26994580
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  26994625 aaagtgaatcataccttgggggtgaagcaaggtcacccttatatag 26994580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 8938970 - 8939028
Alignment:
Q  63 aaaaagtgtgggaaa-gtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||||||||| ||||||||||| ||||||||||||| | |||||| ||||||||    
T  8938970 aaaaagtgtgggaaaagtgaatcatacattgagggtgaagctaagtcaccgttatatag 8939028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 20025355 - 20025397
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttata 117  Q
    |||||||||||| ||||||||||||||| ||||||||||||||    
T  20025355 aaagtgaatcattccttgagggtgaagctaggtcacccttata 20025397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 22903165 - 22903209
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatata 119  Q
    |||||||||||||||||||||||||| |||  |||||||||||||    
T  22903165 aaagtgaatcataccttgagggtgaaacaatatcacccttatata 22903209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 32418503 - 32418460
Alignment:
Q  77 agtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||||||||||||| ||||||||| |||||||| |||||    
T  32418503 agtgaatcataccttgaggatgaagcaagttcacccttgtatag 32418460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 4477257 - 4477323
Alignment:
Q  64 aaaagtgtggga-aagtgaatcataccttgagggtgaagcaaggtcacccttatatagccacgtgtg 129  Q
    |||||||||||| |||||||||  |||||| ||||||||| | ||||||||||||||| || |||||    
T  4477257 aaaagtgtgggagaagtgaatcggaccttgggggtgaagctaagtcacccttatataggcatgtgtg 4477323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 22865844 - 22865878
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||| ||||||||||||||    
T  22865844 taccttgagggtgaagcaagttcacccttatatag 22865878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 26348099 - 26348065
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||| ||||||||||||||    
T  26348099 taccttgagggtgaagcaagttcacccttatatag 26348065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 31202383 - 31202349
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||| ||||||||||||||    
T  31202383 taccttgagggtgaagcaagttcacccttatatag 31202349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 25333807 - 25333851
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatata 119  Q
    |||||||||||||| ||||| |||||||||| |||| ||||||||    
T  25333807 aaagtgaatcatactttgagagtgaagcaagttcactcttatata 25333851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 34493585 - 34493625
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcaccctta 115  Q
    |||||||||||||||||||||||||| | | ||||||||||    
T  34493585 aaagtgaatcataccttgagggtgaaactaagtcaccctta 34493625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 26 - 200
Target Start/End: Original strand, 46016133 - 46016298
Alignment:
Q  26 cgacgatcaaatcagtatgaaaaatgagaggtgtgtaaaaaagtgtgggaaagtgaatcataccttgagggtgaagcaaggtcacccttatatagccacg 125  Q
    |||||||||||||||||||| |||||||||| ||||  ||        |||||||| |||||||||  ||| ||||||||||||||||||||||    ||    
T  46016133 cgacgatcaaatcagtatgagaaatgagaggagtgtgtaa--------gaaagtgagtcataccttatgggggaagcaaggtcacccttatata--agcg 46016222  T
Q  126 tgtgtg-gagtaaccgtctctgtgtgatgtggcgccttatcaggggtctgttgagggacacgtgtacggtgcttga 200  Q
    || ||| ||||||| |||||  ||||||||||||||| |||||| | | |||||  |||| |||||||||||||||    
T  46016223 tgcgtgagagtaactgtctccatgtgatgtggcgcctcatcaggaggccgttgacagacatgtgtacggtgcttga 46016298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 8019020 - 8019144
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatagccacgtgtgtg-gagtaaccgtctctgtgtgatgtggcgccttatc-aggggtc 172  Q
    |||||||||||||||||| ||||||||| | |||||||||||||||   |||||||| || ||||||||||   |||||| ||||||| ||| || ||||    
T  8019020 aaagtgaatcataccttgggggtgaagctatgtcacccttatatag--gcgtgtgtgagaataaccgtctc--cgtgatgcggcgcctcatcaagaggtc 8019115  T
Q  173 tgttgagggacacgtgtacggtgcttgatg 202  Q
     ||||| ||||||||||||||||| |||||    
T  8019116 -gttgaaggacacgtgtacggtgcctgatg 8019144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 34273159 - 34273204
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||| |||||||||||||||||||||| ||| |||||||||||    
T  34273159 aaagtgactcataccttgagggtgaagcaatgtcgcccttatatag 34273204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 2140969 - 2140925
Alignment:
Q  73 ggaaagtgaatcataccttgagggtgaagcaaggtcacccttata 117  Q
    |||||||||| ||||||||||||||||||| | ||||||||||||    
T  2140969 ggaaagtgaaccataccttgagggtgaagctaagtcacccttata 2140925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 52565652 - 52565695
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatat 118  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||||    
T  52565652 aaagtgaatcataacttgagggtgaagcaagttcatccttatat 52565695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 21098854 - 21098820
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||| ||||||||||||||    
T  21098854 taccttgagggtgaagcaagttcacccttatatag 21098820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 16030467 - 16030512
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||||| ||||| | | |||||||||||||    
T  16030467 aaagtgaatcataccttgagggcgaagctaagccacccttatatag 16030512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 16050466 - 16050511
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||| |||||||||||| |||||||| | |||||||||||||    
T  16050466 aaagtgaaccataccttgaggatgaagcaatgccacccttatatag 16050511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 22414847 - 22414892
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||||||| ||||||||||||||||| ||| |||| |||||    
T  22414847 aaagtgaatcatatcttgagggtgaagcaagttcatccttgtatag 22414892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 26977816 - 26977857
Alignment:
Q  79 tgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||||||||||||||||||||  | ||||||||||||    
T  26977816 tgaatcataccttgagggtgaagcaatttgacccttatatag 26977857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 18246201 - 18246257
Alignment:
Q  63 aaaaagtgtgggaaa-gtgaatcataccttgagggtgaagcaaggtcacccttatat 118  Q
    |||||||||| |||| |||| |||||||||||||||||||  | |||||||||||||    
T  18246201 aaaaagtgtgagaaaagtgattcataccttgagggtgaagataagtcacccttatat 18246257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 68821 - 68771
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatagccacg 125  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  68821 aaagtgaatcataccttgagggagaagcaaggtcacccttatataggcacg 68771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 9801103 - 9801053
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatagccacg 125  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  9801103 aaagtgaatcataccttgagggtgaagcaatgtcacccttatataggcacg 9801053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 16704474 - 16704519
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  16704474 aaagtgaatcataccttgagggtgaagcaagttcacccttatatag 16704519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 20622480 - 20622524
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatata 119  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  20622480 aaagtgaatcataccttgagggtgaagcaagttcacccttatata 20622524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 8122934 - 8122893
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttat 116  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  8122934 aaagtgaatcataccttgagggtgaagcaatgtcacccttat 8122893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 30429932 - 30429875
Alignment:
Q  63 aaaaagtgtgggaaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||||||||| || |||||||||| | ||||| |||||||||    
T  30429932 aaaaagtgtgggaaagtgaatcatactttaagggtgaagctaagtcactcttatatag 30429875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 2311850 - 2311812
Alignment:
Q  78 gtgaatcataccttgagggtgaagcaaggtcacccttat 116  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  2311850 gtgaatcataccttgagggtgaagcaatgtcacccttat 2311812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 21342306 - 21342261
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||| |||||||||||| ||||| ||||||||||||    
T  21342306 aaagtgaatcatacattgagggtgaagtaaggttacccttatatag 21342261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 30607000 - 30607045
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||| ||||||||||||||||| |||| |||||||||||||    
T  30607000 aaagtgaattataccttgagggtgaagtaaggccacccttatatag 30607045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 12108502 - 12108541
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatatagccacg 125  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  12108502 taccttgagggtgaagcaagttcacccttatataggcacg 12108541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 14860107 - 14860073
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||| ||||||||||||||    
T  14860107 taccttgagggtgaagcaagttcacccttatatag 14860073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 20118985 - 20118951
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||| ||||||||||||||    
T  20118985 taccttgagggtgaagcaagttcacccttatatag 20118951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 28715507 - 28715465
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttata 117  Q
    |||||||||||||||||||||||||| |||  |||||||||||    
T  28715507 aaagtgaatcataccttgagggtgaaacaatatcacccttata 28715465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 119
Target Start/End: Complemental strand, 12731568 - 12731536
Alignment:
Q  87 accttgagggtgaagcaaggtcacccttatata 119  Q
    ||||||||||||||||||| |||||||||||||    
T  12731568 accttgagggtgaagcaagttcacccttatata 12731536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 17143768 - 17143724
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatata 119  Q
    |||||||||||||||||| ||||||| |||  |||||||||||||    
T  17143768 aaagtgaatcataccttgggggtgaaacaacatcacccttatata 17143724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 15449 - 15404
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  15449 aaagtgaatcataccttgagggtgaagcaagttcacccttatatag 15404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 3586435 - 3586480
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  3586435 aaagtgaatcataccttgagggtgaagcaagttcacccttatatag 3586480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 36267570 - 36267615
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  36267570 aaagtgaatcataccttgagggtgaagcaagttcacccttatatag 36267615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 45258171 - 45258126
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  45258171 aaagtgaatcataccttgagggtgaagcaaagtcacccttatatag 45258126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 23257842 - 23257898
Alignment:
Q  65 aaagtgtgggaaa-gtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||||||| ||||||  ||||||||||||||| |||||||||||||||||||    
T  23257842 aaagtgtgggaaaagtgaattgtaccttgagggtgaatcaaggtcacccttatatag 23257898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 147236 - 147287
Alignment:
Q  69 tgtgggaaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||| |||| | |||||||||||||| ||||||||||||||||||||    
T  147236 tgtgggaaaatgaaacgtaccttgagggtgacgcaaggtcacccttatatag 147287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 24499861 - 24499903
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttata 117  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  24499861 aaagtgaatcataccttaagggtgaagcaagttcacccttata 24499903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 15390593 - 15390559
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||| ||||||||||||||    
T  15390593 taccttgagggtgaagcaagttcacccttatatag 15390559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 29711099 - 29711133
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||| ||||||||||||||    
T  29711099 taccttgagggtgaagcaagttcacccttatatag 29711133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 41501111 - 41501070
Alignment:
Q  57 tgtgtaaaaaagtgtgggaaagtgaatcataccttgagggtga 99  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  41501111 tgtgtaaaaaagtgtgggaaa-tgaatcgtaccttgagggtga 41501070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 12169045 - 12169090
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||| |||||||||||||||||||| | |||||||| ||||    
T  12169045 aaagtgaattataccttgagggtgaagcaatgccacccttaaatag 12169090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 17672032 - 17672088
Alignment:
Q  64 aaaagtgtgggaaa-gtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||| ||||||||||||||| ||||||||| | |||||||||| ||||    
T  17672032 aaaagtgtgggaaaagtgaatcataccttg-gggtgaagctaagtcacccttaaatag 17672088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 120
Target Start/End: Original strand, 18772332 - 18772365
Alignment:
Q  87 accttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||||||||||||| ||||||||||||||    
T  18772332 accttgagggtgaagcaagttcacccttatatag 18772365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 19919085 - 19919040
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||||||||||||||| ||||||||  |||| |||||||||    
T  19919085 aaagtgaatcataccttgaggatgaagcaatatcactcttatatag 19919040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 24157314 - 24157281
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatata 119  Q
    |||||||||||||||||||| |||||||||||||    
T  24157314 taccttgagggtgaagcaagttcacccttatata 24157281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 13995 - 14039
Alignment:
Q  76 aagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  13995 aagtgaatcataccttgagggtgaagcaagatcacccttatatag 14039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 9135380 - 9135329
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatagccacgt 126  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| |||||    
T  9135380 aaagtgaatcataccttgagggtgaagcaaattcacccttatatagacacgt 9135329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 26762930 - 26762885
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||    
T  26762930 aaagtgaatcataccttgagggtgaagcaaggacacccatatatag 26762885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 5863259 - 5863304
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||||    
T  5863259 aaagtgaatcataccttgagggtggagcaatgtcacccttgtatag 5863304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 29373522 - 29373563
Alignment:
Q  79 tgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||||||||| |||||||| ||||||    
T  29373522 tgaatcataccttgagggtgaagcaatgtcaccctcatatag 29373563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 43172055 - 43172010
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||| |||||||||||||||  ||||||||||||||    
T  43172055 aaagtgaatcatacattgagggtgaagcaacttcacccttatatag 43172010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 4781508 - 4781474
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||| ||||||||||||||    
T  4781508 taccttgagggtgaagcaagttcacccttatatag 4781474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 4813939 - 4813905
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||| ||||||||||||||    
T  4813939 taccttgagggtgaagcaagttcacccttatatag 4813905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 16203794 - 16203839
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||| |||||||| ||||||||| || |||||||||||||||    
T  16203794 aaagtgaaccataccttaagggtgaagaaaagtcacccttatatag 16203839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 95829 - 95779
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatagccacg 125  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||| ||||    
T  95829 aaagtgaatcataccttcagggtgaagcaacgtcacccttatataggcacg 95779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 18323015 - 18323060
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||    
T  18323015 aaagtgaatcatacattgaggatgaagcaaggtcacccttatatag 18323060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 30477713 - 30477758
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||||||||||||||||||||| || |||||||||||||||    
T  30477713 aaagtgaatcataccttgagggtgaagtaatgtcacccttatatag 30477758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 23497180 - 23497137
Alignment:
Q  77 agtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||||||||||||||| |||||| |||||||||||||||    
T  23497180 agtgaatcataccttgagggttaagcaaagtcacccttatatag 23497137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 23269305 - 23269351
Alignment:
Q  74 gaaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||||| ||||||||||||||||||| ||||||| |||||||    
T  23269305 gaaagtgaatcgtaccttgagggtgaagcaatgtcacccatatatag 23269351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 5859888 - 5859932
Alignment:
Q  76 aagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||    
T  5859888 aagtgaatcgtaccttgagattgaagcaaggtcacccttatatag 5859932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 7362839 - 7362743
Alignment:
Q  132 gagtaaccgtctctgtgtgatgtggcgccttatcaggggtctgttgagggacacgtgtacggtgcttgatgcactagggcgcg-tccagtgaggtag 227  Q
    ||||||| |||| ||||||||| ||  |||||||||||||| ||||||||| || |||| | ||||||||| |   ||||||| |||||||||||||    
T  7362839 gagtaactgtctttgtgtgatgcggtaccttatcaggggtccgttgagggatacatgtatgttgcttgatgtatgggggcgcgttccagtgaggtag 7362743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 13754830 - 13754880
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatagccacg 125  Q
    |||||||||| ||||||||||||||||| | ||||| ||||||||| ||||    
T  13754830 aaagtgaatcctaccttgagggtgaagctaagtcactcttatataggcacg 13754880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 4565401 - 4565368
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatata 119  Q
    |||||||||||||||||||| |||||||||||||    
T  4565401 taccttgagggtgaagcaagttcacccttatata 4565368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 17319651 - 17319606
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||| ||| |||||||||||||| ||||| ||||||||    
T  17319651 aaagtgaatcatgcctcgagggtgaagcaagttcacctttatatag 17319606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 17698304 - 17698259
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||| |||| ||||||||||||||||| ||||| |||||||    
T  17698304 aaagtgaattatactttgagggtgaagcaaggccacccatatatag 17698259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 24507529 - 24507574
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||||||||||||||||||||| | | |||||| |||||||    
T  24507529 aaagtgaatcataccttgagggtgaagtaggttcacccatatatag 24507574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 42331 - 42365
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||| ||||||||||||||    
T  42331 taccttgagggtgaagcaagttcacccttatatag 42365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 4432 - 4398
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||||| ||||||||||||||    
T  4432 taccttgagggtgaagcaagttcacccttatatag 4398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 120
Target Start/End: Original strand, 5122 - 5155
Alignment:
Q  87 accttgagggtgaagcaaggtcacccttatatag 120  Q
    ||||||||||||||||||| ||||||||||||||    
T  5122 accttgagggtgaagcaagttcacccttatatag 5155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 10750 - 10705
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||| ||| |||||||||||||| ||||| ||||||||    
T  10750 aaagtgaatcatgcctcgagggtgaagcaagttcacctttatatag 10705  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 149218 - 149263
Alignment:
Q  75 aaagtgaatcataccttgagggtgaagcaaggtcacccttatatag 120  Q
    |||||||||||||||||| ||||||||  | |||||||||||||||    
T  149218 aaagtgaatcataccttgggggtgaagttaagtcacccttatatag 149263  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 215355 - 215391
Alignment:
Q  86 taccttgagggtgaagcaaggtcacccttatatagcc 122  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  215355 taccttgagggtgaagcaagttcatccttatatagcc 215391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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