View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_46 (Length: 431)
Name: NF19175_low_46
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 421
Target Start/End: Original strand, 26653092 - 26653493
Alignment:
| Q |
20 |
tttagctgattataggtgttcattgagaaattatgagtgaaggatgaaacaaacaatagacaagttatgttgggaataggcttcattagttagttcatct |
119 |
Q |
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| T |
26653092 |
tttagctgattataggtgtttattgagaaattatgagtgaaggatgaaacaaacaatagacaagttatgttgggaatagacttcattagttagttcatct |
26653191 |
T |
|
| Q |
120 |
ttccttgatcaactttaaattccttttatctcaattatacattcatctatcacccttcatggatcttgatgtctcgtaaataatggtagatcgtctctaa |
219 |
Q |
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| T |
26653192 |
ttccttgatcaactttaaattccttttattccaattataccttcacctatcacccttcatggatcttgatatctcgtaaataatggtagatcgtctctag |
26653291 |
T |
|
| Q |
220 |
tctctaacctctgatgttacgattaattacctaaaagagaaacattaagttccaacaatatgtgtgattgtaaacgtagcccgacaagtgcccttgcctg |
319 |
Q |
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| T |
26653292 |
tctctaacctctgatgttacgattagttacttaaaaaagaagcattaagtttcaacaatgtgcgtgattgtaaacctaatccgacaaatacccttgcctg |
26653391 |
T |
|
| Q |
320 |
ttttccttacaagggatgtatgattctagcatgccccaaatcaaaagatcaatcaagggattttgatatgttgcataagtcgacttgatctacaagcctt |
419 |
Q |
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| T |
26653392 |
ttttccttataagggatgtctgattctagcatgccccaagtcaaaagatcaatcaagggattttgatatgttgcataagtcgacttgatctacaagcctt |
26653491 |
T |
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| Q |
420 |
tg |
421 |
Q |
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| T |
26653492 |
tg |
26653493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 31930869 - 31930647
Alignment:
| Q |
20 |
tttagctgattataggtgttcattgagaaattatgagtgaaggatgaaacaaacaatagacaagttatgttgggaataggcttcattagttagttca--- |
116 |
Q |
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| T |
31930869 |
tttagttgattgtaggtgtttattgacacattatgagtgaggggtgaaacaaacaatagaaaagttgtgttgggattaagcttcactagtcagttcaata |
31930770 |
T |
|
| Q |
117 |
---tctttccttgatcaactttaaattccttttatctcaattatacattcatctatcacccttcatggatcttgatgtctcgtaaataatggtagatcgt |
213 |
Q |
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||||| | ||||| | | |||| |||| |||| |||||||||| |||| ||||||| | || ||||| |||||||| || |||||| ||||||| |
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| T |
31930769 |
atgtcttttcctgatcgattataaactcctcttatttcaattataccttcacttatcaccttaaatagatctcgatgtctcatagataatgagagatcgt |
31930670 |
T |
|
| Q |
214 |
ctctaatctctaacctctgatgt |
236 |
Q |
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| T |
31930669 |
ctctagtctctaacttatgatgt |
31930647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 26744470 - 26744379
Alignment:
| Q |
145 |
ttatctcaattatacattcatctatcacccttcatggatcttgatgtctcgtaaataatggtagatcgtctctaatctctaacctctgatgt |
236 |
Q |
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||||| |||||||| |||| |||||||||||||| ||||| |||||||| ||||||||| |||| |||||| | |||||||| |||||| |
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| T |
26744470 |
ttatcccaattatatcttcacctatcacccttcatagatctcgatgtctcacaaataatgggagataatctctagtatctaacctttgatgt |
26744379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 27751041 - 27751095
Alignment:
| Q |
135 |
taaattccttttatctcaattatacattcatctatcacccttcatggatcttgat |
189 |
Q |
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|||| |||| |||| ||||||||||||||| ||||| |||||||| ||||||||| |
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| T |
27751041 |
taaactcctcttatttcaattatacattcacctatcgcccttcatagatcttgat |
27751095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 18435520 - 18435572
Alignment:
| Q |
64 |
tgaaacaaacaatagacaagttatgttgggaataggcttcattagttagttca |
116 |
Q |
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||||| |||||| ||||||||| |||||||| || |||||||||||||||||| |
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| T |
18435520 |
tgaaataaacaacagacaagttgtgttgggattaagcttcattagttagttca |
18435572 |
T |
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