View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_49 (Length: 424)
Name: NF19175_low_49
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_49 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 410
Target Start/End: Original strand, 30876892 - 30877287
Alignment:
| Q |
11 |
agaaaattcacactcaccaataaccattccacaaaacaaaaaatcaaattgatctaagtattgacagtgatagaaacagtattaaaatttgacagctaag |
110 |
Q |
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| T |
30876892 |
agaaaattcacactcaccaataaccattccacaaaacaaaaaatcaaattgatctaagtattgacattgatagaaacagtattaaaatttgacagctaaa |
30876991 |
T |
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| Q |
111 |
taaccttaaagtgatctaaaaaggtaaaatttaaaga-tgatcacaattgtgtggttttgaataaaaatggaaactttttaggatcaaaagaaatgggtg |
209 |
Q |
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| T |
30876992 |
taacctcaaagtgatctaaaaaggtaaaatttaaagattcttcataattgtgtggttttgaataaaaatggaaactttttaggatcaaaagaaatgggtg |
30877091 |
T |
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| Q |
210 |
ctaattttttgtgaggattaaccaaaataaacaaaagggtatcaattaaac--agcattcttccaaaatactgaagatctgttatagctactagcaagga |
307 |
Q |
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| T |
30877092 |
ctaattttttgtgaggattaaccaaaataaacaaaagggtaacaattaaaccaagcattcttccaaaatattgaagatctgttatagctactagcaagga |
30877191 |
T |
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| Q |
308 |
acgttctctatagtgaaagaagcgcgtaaagcagaaaattttaaacaattgtgacaaataatagattatcacctgatggaaatgaaggaatgaaggatga |
407 |
Q |
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| T |
30877192 |
acgttctctatagtgaaagaagcgcgtaaagcagaaaattttaaacaattgtgacaa-------attatcacctgatggaaaggaaggaatggaggatga |
30877284 |
T |
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