View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_53 (Length: 410)
Name: NF19175_low_53
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 51694266 - 51693890
Alignment:
| Q |
16 |
agtagcatgaaaaagatgtaggggtagcatgtattgtttgaacctaaaatatttggagacaaaaattcttacactaacatgggctcattcatcactcgtg |
115 |
Q |
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| T |
51694266 |
agtagcatgaaaaagatgtaggggtagcatgtattgtttgaacctaaaatatttggagacaaaaattcttacactaacatgggctcattcatcactcgtg |
51694167 |
T |
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| Q |
116 |
caagaggggtgaaagggccctctataaggccgaatccgattcacatacccattacccatgtgccctagttttttgtctgaaaccgctgacttttgaaaag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51694166 |
caagaggggtgaaagggccctctataaggccgaatccgattcacatacccattacccatgtgccctagttttttgtctgaaaccgctgacttttgaaaag |
51694067 |
T |
|
| Q |
216 |
acacatataacctcattattgacatgacacaaacaaaatcaatactcaaaattttgtgcatggtgcagtgactggttgggagcatctccaccaaaacccg |
315 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
51694066 |
acacatataacctcattattgtcatgacacaaacaaaatcaatactcaaaattttgtgtatggtgtagtgactggttgggagcatctccaccaaaacccg |
51693967 |
T |
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| Q |
316 |
taaattacggccctctctcaaatacgttatctactttcgtcgttttcggttcttacaagtcactttcttgtctctac |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
51693966 |
taaattacggccctctctcaaatacgttatctactttcgtcgttttcggttcttacaagtcactatcttgtccctac |
51693890 |
T |
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