View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_55 (Length: 402)
Name: NF19175_low_55
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 35904724 - 35905120
Alignment:
| Q |
1 |
ccatgataaagtatctattggtttgtttcctttgtatagatgctccctcatggttccatgagccatgtaatcataaaccaaacacatttcctcatcttcc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35904724 |
ccatgataaagtatctattggtttgtttcctttgtatagatgctccctcatggttccatgagccatgtaatcataaaccaaacacatttcctcatcttcc |
35904823 |
T |
|
| Q |
101 |
tcacaaaaaccaatcaaagacactaaatgtttatgtctaagctttgaaagcatctcaatttcagtttgaaattcatttactccttgttctgattgtggat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35904824 |
tcacaaaaaccaatcaaagacactaaatgtttatgtctaagctttgaaagcatctcaatttcagtttgaaattcatttactccttgttctgattgtggat |
35904923 |
T |
|
| Q |
201 |
ttgatctcttaatagccactttaacaccattatcaataacacccttgtaaacctttccaaaccctcctacaccaataacattggactcatcaaaattctt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35904924 |
ttgatctcttaatagccactttaacaccattatcaataacacccttgtaaacctttccaaaccctcctacaccaataacattggactcatcaaaattctt |
35905023 |
T |
|
| Q |
301 |
ggttgcttgcttcatctcttgtaaagagaaatatcgacacagtccttgagccatggctaaatttgcaccactgcccatagtactcttctctgctcct |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
35905024 |
ggttgcttgcttcatctcttgtaaagagaaatatcgacacagtccttgagccatggctaaatttgcaccactgcccatagtactcttccctgatcct |
35905120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 52 - 357
Target Start/End: Complemental strand, 47624468 - 47624163
Alignment:
| Q |
52 |
ggttccatgagccatgtaatcataaaccaaacacatttcctcatcttcctcacaaaaaccaatcaaagacactaaatgtttatgtctaagctttgaaagc |
151 |
Q |
| |
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||||||| |||||||||| ||||||||||||||||| || | ||||||||| ||||| |||||||| ||||| ||||| || ||||| | ||| |||||| |
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| T |
47624468 |
ggttccaagagccatgtagtcataaaccaaacacatctcattatcttcctcgcaaaatccaatcaaggacaccaaatgcttgtgtctcaacttagaaagc |
47624369 |
T |
|
| Q |
152 |
atctcaatttcagtttgaaattcatttactccttgttctgattgtggatttgatctcttaatagccactttaacaccattatcaataacacccttgtaaa |
251 |
Q |
| |
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|||||||| || || || |||||||| |||||||||||||| ||||||||||| |||||||| |||||| | ||||||||||| ||||||||||||| |
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| T |
47624368 |
atctcaatctcggtctggaattcattgactccttgttctgactgtggatttgacctcttaatcgccactagcattccattatcaatgacacccttgtaaa |
47624269 |
T |
|
| Q |
252 |
cctttccaaaccctcctacaccaataacattggactcatcaaaattcttggttgcttgcttcatctcttgtaaagagaaatatcgacacagtccttgagc |
351 |
Q |
| |
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|||||||||| || || || ||||| || ||||||||||||||| | |||||||||||||| ||||||||||| || ||||| ||||| || ||||| | |
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| T |
47624268 |
cctttccaaatccaccaactccaatcacgttggactcatcaaaactgttggttgcttgctttatctcttgtaacgaaaaatagcgacatagaccttgggt |
47624169 |
T |
|
| Q |
352 |
catggc |
357 |
Q |
| |
|
|||||| |
|
|
| T |
47624168 |
catggc |
47624163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 55 - 243
Target Start/End: Original strand, 13973918 - 13974106
Alignment:
| Q |
55 |
tccatgagccatgtaatcataaaccaaacacatttcctcatcttcctcacaaaaaccaatcaaagacactaaatgtttatgtctaagctttgaaagcatc |
154 |
Q |
| |
|
||||| || |||||| |||||||| | | |||||| |||| ||| |||||| | ||||||| || || |||||| ||||||||||||| || | ||| |
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| T |
13973918 |
tccattaggcatgtactcataaacaagaatcatttcttcattttcatcacaatatccaatcattgaaaccaaatgtctatgtctaagcttagacaacatt |
13974017 |
T |
|
| Q |
155 |
tcaatttcagtttgaaattcatttactccttgttctgattgtggatttgatctcttaatagccactttaacaccattatcaataacacc |
243 |
Q |
| |
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| |||||||| || |||||||| | ||||||||||||||||||||| |||||| | ||| |||| ||| || | |||||| ||||| |
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| T |
13974018 |
tggatttcagtctggaattcattgataccttgttctgattgtggatttcctctcttgacagcaacttgaaccccttcatcaatcacacc |
13974106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 11380400 - 11380291
Alignment:
| Q |
53 |
gttccatgagccatgtaatcataaaccaaacacatttc-ctcatcttcctcacaaaaaccaatcaaagacactaaatgtttatgtctaagctttgaaagc |
151 |
Q |
| |
|
||||||| |||||||| |||||||||||| |||||| || ||| | ||||| ||||||||||||||||| | |||| | ||||| || ||||| ||| |
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| T |
11380400 |
gttccatttgccatgtactcataaaccaaaatcatttcacttttct-cttcacagaaaccaatcaaagacacaagatgtctgtgtcttagttttgagagc |
11380302 |
T |
|
| Q |
152 |
atctcaatttc |
162 |
Q |
| |
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||||||||||| |
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|
| T |
11380301 |
atctcaatttc |
11380291 |
T |
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