View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_56 (Length: 392)
Name: NF19175_low_56
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 26 - 194
Target Start/End: Original strand, 53248779 - 53248944
Alignment:
| Q |
26 |
cttttaataattagtaacattgtcttatttacttaatctaaatgttgaatttgttattcaggatgcatttactaaatttattttgatattttctggaaaa |
125 |
Q |
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| T |
53248779 |
cttttaataattagtaacattgtcttatttacttaatctaaatgttgaatttgttattcaggatgcatttactaaatttattttgatattttctggaaaa |
53248878 |
T |
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| Q |
126 |
tatatgatcatattacaaattatacattcttatctaagtgtttggagtactcatttactgaaacgaatg |
194 |
Q |
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| T |
53248879 |
tatatg---atattacaaattatacattcttatctaagtgtttggagtactcatttactgaaacaaatg |
53248944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 244 - 378
Target Start/End: Original strand, 53248936 - 53249070
Alignment:
| Q |
244 |
aaacaaacgtctttaacttacgaaacaaaatacttttagagcagtagagaaattgtatatagacaacaagatggtacacagtagcaatctcttcgtcttt |
343 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53248936 |
aaacaaatgtctttaacttacgaaacaaaatatttttagagcagtagagaaattgtatatagacaacaagatggtacacagtagcaatctcttcgtcttt |
53249035 |
T |
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| Q |
344 |
aaatcactgatgcataatcaactaaatgcaaaagt |
378 |
Q |
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| T |
53249036 |
aaatcactgatgcataatcaattaaatgcaaaagt |
53249070 |
T |
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