View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_58 (Length: 390)
Name: NF19175_low_58
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 6836521 - 6836153
Alignment:
| Q |
1 |
aaaataattaaaggaacttaacatctacgatcattaaaaacattgctagaagaatccggcaaagaaaaaagagtacagagcaaacaaaaacataaacacg |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6836521 |
aaaataattaaaggaacttaacatctacc-tcattaaaaacattgctagaagaatccggcaaagaaaaaagagtacagagcaaacaaaaacataaacacg |
6836423 |
T |
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| Q |
101 |
tttatattacatataaatgacaatcttccacacaaatacatgccaaatgaagtggttaatttgggctaaatatattctctgccgcaaatatttttccttc |
200 |
Q |
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| T |
6836422 |
tttatattacatataaatgacaatcttccacacaaatacatgccaaatgaagtggttaatttgggctaaatatattctctgccgcaaatatctttccttc |
6836323 |
T |
|
| Q |
201 |
accctagcaaacaaactataatcactaacatttgctagcttattaaaaaataaataccagtccttacaaggataacatttaaacatacatatcttacata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6836322 |
accctagcaaacaaactataatcactaacatttgctagcttattaaaaaataaataccagtccttacaaggataacatttaaacatacatatcttacata |
6836223 |
T |
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| Q |
301 |
tattcaacacctaacacactaattatagtcgtaattaaagattatacaatcaaatcaagcgggtgcaatc |
370 |
Q |
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| T |
6836222 |
tattcaacacctaacacactaattatagtcgtaattaaagattgtacaatcaaatcaagcgggtgcaatc |
6836153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 6633381 - 6633223
Alignment:
| Q |
1 |
aaaataattaaaggaacttaacatctacgatcattaaaaacattgctagaagaatccggcaaagaaaaaagagtacagagcaaacaaaaacataaacacg |
100 |
Q |
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||||||||||| | |||||||||||| | ||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
6633381 |
aaaataattaaggaaacttaacatctgcc-tcattaaaaaccttgctagaagaatccagcaaggaaaaaagagtacagagcaaacaaaaacataaacaca |
6633283 |
T |
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| Q |
101 |
tttatattacatataaatgacaatcttccacacaaatacatgccaaatgaagtggttaatt |
161 |
Q |
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||||||||||| | ||| ||||| |||||||||||||||| |||||||||||||||||| |
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| T |
6633282 |
tttatattacacaaaaaatacaat-ttccacacaaatacatagcaaatgaagtggttaatt |
6633223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 359
Target Start/End: Complemental strand, 6633158 - 6633006
Alignment:
| Q |
212 |
caaactataatcactaacatttgctagcttatt--aaaaaataaa-----taccagtccttacaaggataacatttaaacata--catatcttacatata |
302 |
Q |
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||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
6633158 |
caaactataatcactaacatttgct----tattgaaaaaaataaaaaatataccagtccttacaaggataaaatttaaacatatacatatcttacatata |
6633063 |
T |
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| Q |
303 |
ttcaacacctaacacactaattatagtcgtaattaaagattatacaatcaaatcaag |
359 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||| ||| || |||||||| |
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| T |
6633062 |
ctcaacatctaacacactaattatagtcgaaattaaagattgtacgattaaatcaag |
6633006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 359
Target Start/End: Complemental strand, 6636486 - 6636391
Alignment:
| Q |
264 |
ttacaaggataacatttaaacatacatatcttacatatattcaacacctaacacactaattatagtcgtaattaaagattatacaatcaaatcaag |
359 |
Q |
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|||||||||||| | ||||||||||| |||||||||||| |||| | || ||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
6636486 |
ttacaaggataaaaattaaacatacaaatcttacatatactcaatgcatagcacactaattatagtcgtaattaaagattgcacgatcaaatcaag |
6636391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 6808512 - 6808420
Alignment:
| Q |
68 |
aaagagtacagagcaaacaaaaacataaacacgtttatattacatataaat---gacaatcttccacacaaatacatgccaaatgaagtggtta |
158 |
Q |
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| T |
6808512 |
aaagagtacagatcaaacaaaaacataaccacatttatattacatataaataaagacaa-cttacacacaagtacatgccaaatgaagtggtta |
6808420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 304 - 359
Target Start/End: Complemental strand, 6808287 - 6808232
Alignment:
| Q |
304 |
tcaacacctaacacactaattatagtcgtaattaaagattatacaatcaaatcaag |
359 |
Q |
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|||||||||| |||||||||||||||||||||| |||||| ||| ||||||||||| |
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| T |
6808287 |
tcaacacctagcacactaattatagtcgtaattgaagattgtacgatcaaatcaag |
6808232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 6636663 - 6636597
Alignment:
| Q |
102 |
ttatattacatataaat----gacaatcttccacacaaatacatgccaaatgaagtggttaatttggg |
165 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6636663 |
ttatattacatataaataaaagacaa-cttccacacaaatacatgccaaatgaagtggttaacttggg |
6636597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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