View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19175_low_60 (Length: 383)
Name: NF19175_low_60
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_60 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 15 - 367
Target Start/End: Original strand, 31479624 - 31479974
Alignment:
| Q |
15 |
aagacttacctaaaatagtagactctattggtgaaaatgaaattacactatgggcaaggacaccagccagaagagtaaagaaaagcatatgggtttaatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31479624 |
aagacttacctaaaatagtagactctattggtgaaaatgaaattacactatgggcaaggacaccagccagaagagtaaagaaaagcatatgggtttaatt |
31479723 |
T |
|
| Q |
115 |
ttcaccaatagaagtaatgatgaatgattataannnnnnnnnn--atcaataataatgttgatactaattaattaattaatataattatagggtgcaggg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31479724 |
ttcaccaatagaagtaatgatgaatgattataattttttttttttatcaataataatgttgata----ttaattaattaatataattatagggtgcaggg |
31479819 |
T |
|
| Q |
213 |
tttgatctccgtcccatcttcgcactatatcgataggactttcgccccaatccccacccggatataggaaaattcaccattaataaatcttcaaatgaaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||| |
|
|
| T |
31479820 |
tttgatctccgtcccatcttcgcactatatcgataagactttcgccccaatccccacccggatgtaggaaaattcaccattaatgaatctttaaatgaaa |
31479919 |
T |
|
| Q |
313 |
cagtttcgaagagattctcaactacaaatgcaaattgatgcctttataaaaaaga |
367 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31479920 |
cagtttcggagagattctcatctacaaatgcaaattgatgcctttataaaaaaga |
31479974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University