View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_65 (Length: 368)
Name: NF19175_low_65
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_65 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 51313884 - 51314221
Alignment:
| Q |
13 |
aatatatttgggaacttatgagaaatatatgtactagactactttttaatgcatttgtcaacaacaaaagaagaacgacttactataaatgctgcatgta |
112 |
Q |
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| T |
51313884 |
aatatatttgggaacttatgagaaatatatgtactagactactttttaatgcatttgtcaacaacaaaagaagaacgacttactataaatgctgcatgta |
51313983 |
T |
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| Q |
113 |
aaggtcaagaaaaacatcttgactatgtcttcaaagggtaga-ttaatgtgcatctcttggagagctttttcaaacnnnnnnnttaaccatatgaagatg |
211 |
Q |
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| T |
51313984 |
aaggtcaagaaaaacatcttgactatgtcttcaaagggtagatttaatgtgcatctcttggagagctttttcaaac-aaaaaattaaccatatgaagatg |
51314082 |
T |
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| Q |
212 |
cccagctgatgccaaatgaattggcaacatatctttttggcctctaatccacaacaatcttgggttcttgccaaataatattgcagcaattttcacattt |
311 |
Q |
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| T |
51314083 |
cccagctgatgccaaatgaattggcaacatatctttttggcctctaatccacaacaatcttgggttcttgccaaataatattacagcaattttcacattt |
51314182 |
T |
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| Q |
312 |
cctgaaattgcagctatacaaaaggcagtattgccatct |
350 |
Q |
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| T |
51314183 |
cctgaaattgcagctatacaaaaggcggtattgccatct |
51314221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 198 - 349
Target Start/End: Original strand, 51343906 - 51344060
Alignment:
| Q |
198 |
accatatgaagatgcccagctga---tgccaaatgaattggcaacatatctttttggcctctaatccacaacaatcttgggttcttgccaaataatattg |
294 |
Q |
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| T |
51343906 |
accatatgaagttgcccggctgaggatgccaattgaattggcaacttttcttcatgacctttaatccataccaattctggattcttttcacataaaattc |
51344005 |
T |
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| Q |
295 |
cagcaattttcacatttcctgaaattgcagctatacaaaaggcagtattgccatc |
349 |
Q |
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| T |
51344006 |
ttgcaattttcacgtttcctgaaatagcagctaaacaaaagacagtatttccatc |
51344060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 51320001 - 51320053
Alignment:
| Q |
297 |
gcaattttcacatttcctgaaattgcagctatacaaaaggcagtattgccatc |
349 |
Q |
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| T |
51320001 |
gcaattttcacatttcctgaaacagcagctaaacaaaagacagtatttccatc |
51320053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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