View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_68 (Length: 356)
Name: NF19175_low_68
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 34054871 - 34054549
Alignment:
| Q |
18 |
gaggcaacttacataactggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcgagagattgagctttcggtgacag |
117 |
Q |
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| T |
34054871 |
gaggcaacttacataactggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcgagagattgagctttcggtgacag |
34054772 |
T |
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| Q |
118 |
agagatttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaagattgagctctctgtgacagggagattaaagagggtg |
217 |
Q |
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| T |
34054771 |
agagatttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaagattgagctctctgtgacagggagattaaagagggtg |
34054672 |
T |
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| Q |
218 |
actctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcctcttcctatgtaatatggctg |
317 |
Q |
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| T |
34054671 |
actctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcctcttcctgtgtaatatggctg |
34054572 |
T |
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| Q |
318 |
cctttgaattccccccactttat |
340 |
Q |
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| T |
34054571 |
cctttgaattccccccactttat |
34054549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 202 - 296
Target Start/End: Original strand, 47383348 - 47383442
Alignment:
| Q |
202 |
gagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcc |
296 |
Q |
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| T |
47383348 |
gagattaaagagggtgactctgttatagtggatgctgattccgatggaaatgtgattgtgctcaatggtagtagtggtgctccaaattcattgcc |
47383442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 47383129 - 47383293
Alignment:
| Q |
19 |
aggcaacttacataactggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcga-gagattgagctttcggtgacag |
117 |
Q |
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|||||||||||| ||||||| |||||| |||||| | ||||||||||||||| |||| |||| ||||||| | | ||||||||||| || ||||||| |
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| T |
47383129 |
aggcaacttacaaaactggaggttaaggagatagctgatataatgctgaaggaggtgttcgagagactgaaaaccaaagagattgagctctcagtgacag |
47383228 |
T |
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| Q |
118 |
agagatttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaaga |
182 |
Q |
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| T |
47383229 |
agagatttagggagagagtggtcgacgaaggttataatcctagttatggtgccagacctctaaga |
47383293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 202 - 296
Target Start/End: Original strand, 47818421 - 47818513
Alignment:
| Q |
202 |
gagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcc |
296 |
Q |
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| T |
47818421 |
gagattaaagagggcgactct--tatagtggatgctgattctgatggaaatgtgattgtgctcaatggtagtagtggtgctgcaaattcattgcc |
47818513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 95 - 182
Target Start/End: Original strand, 47818279 - 47818366
Alignment:
| Q |
95 |
agagattgagctttcggtgacagagagatttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaaga |
182 |
Q |
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| T |
47818279 |
agagattgagctttcagtgacagagagatttagggagagagtggtcgatgaaggttataatcctaattatggtgccagacctctaaga |
47818366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 45116297 - 45116366
Alignment:
| Q |
202 |
gagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggta |
271 |
Q |
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| T |
45116297 |
gagatcaaagagggtgactccgtaatagtggatgttgattccgagggtaatgtgattgttctcaatggta |
45116366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 199 - 296
Target Start/End: Original strand, 40246059 - 40246156
Alignment:
| Q |
199 |
agggagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcc |
296 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||||| ||||||||||||||||||||| |
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| T |
40246059 |
agggagattaaagagggcgactctgttatagtggatgctgattctgatggaaacgtgattgtactcaacggtagtactggtgctccagattcattgcc |
40246156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 40245843 - 40246007
Alignment:
| Q |
19 |
aggcaacttacataactggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcga-gagattgagctttcggtgacag |
117 |
Q |
| |
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|||||||| || ||||||| |||||| |||||| ||||||||||||||| |||| |||| ||||||| | | ||||||||||| || ||||||| |
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| T |
40245843 |
aggcaactcactaaactggaggttaaggagatagcagatataatgctgaaggaggtgttcgagagactgaaaaccaaagagattgagctctcagtgacag |
40245942 |
T |
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| Q |
118 |
agagatttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaaga |
182 |
Q |
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||||||||||| ||||||| |||||| |||||||| ||||||||||||| |||| ||||||||| |
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| T |
40245943 |
agagatttagggagagagtggtcgacgaaggttataatcctagttatggggccaggcctctaaga |
40246007 |
T |
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