View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_69 (Length: 354)
Name: NF19175_low_69
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 337
Target Start/End: Complemental strand, 31573448 - 31573123
Alignment:
| Q |
11 |
gatgaagaggaaattaaatgaagacggagtcaaaggatgagaagtggaggagacgggtcttcttctcacttatttgtttatatcaactttgttctattnn |
110 |
Q |
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| T |
31573448 |
gatgaagaggaaattaaatgaagacggagtcaaaagatgagaagtggaggagacgggtcttcttctcacttatttgtt-atatcaactttgttctattaa |
31573350 |
T |
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| Q |
111 |
nnnnntattaggaaaatttgttatattcaatgcaagacttctaagtcatatttgatatatcaaagtttaataccaacgtttaatatcatggttggtccgg |
210 |
Q |
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| T |
31573349 |
aaaaatattaggaaaatttgttatattcaatgcaagacttctaagtcatacttgatatatcaaagtttaataccaacgtttaatatcatggttggtccgg |
31573250 |
T |
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| Q |
211 |
cgatatgaccacaaaaatcaaaataaatttgatattagcacaaaagctcaattttgttgcttctgaaaatttgtggcggaacaacactcgaacacaggaa |
310 |
Q |
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| T |
31573249 |
cgatatgaccacaaaaatcaaaataaatttgatattagcacaaaagctcaattttgttgcttctgaaaatttgtggcggaacaacactcgaacacaggaa |
31573150 |
T |
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| Q |
311 |
gcaatggtcaaatatttaaaaagcata |
337 |
Q |
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| T |
31573149 |
gcaatggtcaaatatttaaaaagcata |
31573123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 323
Target Start/End: Complemental strand, 31542483 - 31542343
Alignment:
| Q |
184 |
caacgtttaatatcatggttggtccggcgatatgaccacaaaaatcaaaataaa-tttgatattagcacaaaagctcaattttgttgcttctgaaaattt |
282 |
Q |
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| T |
31542483 |
caacatttaatatagtggttggtcttgcgacacgaccacaaaaatcacaataaaatttcacgccaacacaaaagctcaattttgttgcttctgaaaattt |
31542384 |
T |
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| Q |
283 |
gtggcggaacaacactcgaacacaggaagcaatggtcaaat |
323 |
Q |
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| T |
31542383 |
gcggcggaacaacaccaagacacaagaagcaatggtcaaat |
31542343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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