View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_70 (Length: 354)
Name: NF19175_low_70
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_70 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 13041919 - 13042262
Alignment:
| Q |
1 |
ttcattggtctccgatgatgtccgatgtttacttcgattcatggttgactgtccacaacctggtcaggtatgtagtaagataggatgcttatattctc-- |
98 |
Q |
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| T |
13041919 |
ttcattggtctccgatgatgtccgatgtttacttcgattcatggttgactgtccacaacctggtcaggtatgtagtaagataggatgcttatattctctc |
13042018 |
T |
|
| Q |
99 |
tgtgtgtgtggcatccaaaagtaattcccaggaaggatgctatcataaagtacatagatacacacaattcttaaggacatgtttttaataatagaatatt |
198 |
Q |
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| T |
13042019 |
tgtgtgtgtggcatccaaaagtaattcccaggaaggatgctatcataaagtacatagatacacacaattcttaaggacatgtttttaataatagaatatt |
13042118 |
T |
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| Q |
199 |
catgtataatgcttctgtggcctcaaattgcttggtaactttttgctttatgttatcaatttgaattttcacattaggaaaggttattatttattaatcc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13042119 |
catgtataatgcttctgtggcctcaaattgcttggtaactttttgctttatgtt----atttgaattttcacattaggaaaggttattatttattaatcc |
13042214 |
T |
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| Q |
299 |
agaatattttatttacaaataaaagacacaatcctgcttctctctgatg |
347 |
Q |
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| T |
13042215 |
agaatattttatttacaaataaaagacac-atcctgcttctctctgatg |
13042262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 28376201 - 28376146
Alignment:
| Q |
5 |
ttggtctccgatgatgtccgatgtttacttcgattcatggttgactgtccacaacc |
60 |
Q |
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|||||||| | |||||||||||| |||||| | ||||||||||||||||||||||| |
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| T |
28376201 |
ttggtctcagctgatgtccgatgcttacttggtttcatggttgactgtccacaacc |
28376146 |
T |
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