View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_72 (Length: 351)
Name: NF19175_low_72
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_72 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 333
Target Start/End: Complemental strand, 23289002 - 23288677
Alignment:
| Q |
7 |
tcgaagaaaatagttataatctcagatggcggaaccaaaagaaaccagatcatcactgccatttcctcttccagggaaatcaaaacttcatgaaaaggga |
106 |
Q |
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| T |
23289002 |
tcgacgaaaaaagttatcatctcagatggcggaaccaaaagaaaccagatcatcactcccatttcctcttccaaggaaatcaaaacttcatgaaaaggga |
23288903 |
T |
|
| Q |
107 |
tcattcaaatatagtattagttaatcatctttattcaaaggctagaagacaaggtctacgaggacctcacatattacagggaactaaatcaaaactaaca |
206 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23288902 |
tcattcaaatatagtcttagttaatcatctttattcaaaggctagaaaacaaggtctacgaggacctcacatattacagggaactaaatcaaaactaaca |
23288803 |
T |
|
| Q |
207 |
aacatatttgacctctttctttctctgtcatgctttctgtgaaacaaggtagaatctatcaaggtttagtagcttcctaggttacaatgttcaaggaatt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23288802 |
aacatatttgacctctttctttctctgtcatgctttctgtgaaacaaggtagaatctatcaaggtttagtagcttcctaggttacaatgttcaaggaatt |
23288703 |
T |
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| Q |
307 |
cgccacgtatcacatctcccatgatag |
333 |
Q |
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| T |
23288702 |
c-ccacgtatcacatctcccatgatag |
23288677 |
T |
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