View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_73 (Length: 348)
Name: NF19175_low_73
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_73 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 329
Target Start/End: Complemental strand, 46845487 - 46845154
Alignment:
| Q |
11 |
gatgaaggatgctagtgtgccttatgagaggggtgcttgggtcaggtgctatggggtgccttttcaagagttaaaatctacaaaacaatnnnnnnnnnnn |
110 |
Q |
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| T |
46845487 |
gatgaaggatgctagtgtgccttatgagaggggtgcttgggtcaggtgctacggggtgccttttcaagagttaaaatctacaaaacaataaaaaaaaaaa |
46845388 |
T |
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| Q |
111 |
ttcttggggagaattgatgaaaaatcatacaaaagaatcaaatc---------------tccacaatccaatcttaatgttggcttttgaatatttatgc |
195 |
Q |
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| T |
46845387 |
atcttggggagaattgatgaaaaatcatacaaaagaatcaaatcagaacagtaactacttccacaatccaatcttaatgttggcttttgaatatttatgc |
46845288 |
T |
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| Q |
196 |
aatgagataaatcctcctatgcaattggtacatgatactttaggggttatctagctcatacaaagcaacaacaagaaacccaaagactattctcacaaag |
295 |
Q |
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| T |
46845287 |
aatgagataaatcctcctatgcaattggtacatgatactttaggggttatctagctcatacaaagcaacaacaagaaacccaaagactattctcacaaag |
46845188 |
T |
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| Q |
296 |
aacaagaaacccgctgctgccaccaccatgaaca |
329 |
Q |
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| T |
46845187 |
aacaagaaacccgctgctgccaccaccatgaaca |
46845154 |
T |
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Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 220542 - 220598
Alignment:
| Q |
14 |
gaaggatgctagtgtgccttatgagaggggtgcttgggtcaggtgctatggggtgcc |
70 |
Q |
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| T |
220542 |
gaaggatagtagtgtaccttatgagaggggtgcatgggtcaggtgttatggggtgcc |
220598 |
T |
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