View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_75 (Length: 339)
Name: NF19175_low_75
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_75 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 56046124 - 56046440
Alignment:
| Q |
16 |
tctttttctcgtaagcaatgaggcgaaagcaatgggagtttgaaattttaacatgagtgtttcctatgatggttaccttgcagcaacctggatatgacat |
115 |
Q |
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| T |
56046124 |
tctttttctcgtaagcaatgaggcgaaagcaataggagtttgaaattttaacatgagtgtttcctatgatggttaccttgcagcaacctggatatgacat |
56046223 |
T |
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| Q |
116 |
tattgcacagttcatgatcgggtatctccttcctggaaaaccaattgcaaacttgctctttaagatttatgggagaatcagcaccgtccatgcactctct |
215 |
Q |
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| T |
56046224 |
tattgcacagttcatgatcgggtatctccttcctggaaaaccaattgcaaacttgctctttaagatttatgggagaatcagcaccgtccatgcactctct |
56046323 |
T |
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| Q |
216 |
ttcttgcaagatctcaaacttgggcactacatgaaaattcccccgcgatgcatgtatacagcacaggtatttttagctcagaatctcctagtttgaactc |
315 |
Q |
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| T |
56046324 |
ttcttgcaagatcttaaacttgggcactacatgaaaattcccccgcgatgcatgtatacagcacaggtatttttagctcagaatctcctagtttgaactc |
56046423 |
T |
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| Q |
316 |
ttttgttatcctttttt |
332 |
Q |
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| T |
56046424 |
ttttgttatcctttttt |
56046440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 42 - 255
Target Start/End: Original strand, 55707466 - 55707670
Alignment:
| Q |
42 |
aagcaatgggagtttgaaattttaacatgagtgtttcctatgatggttaccttgcagcaacctggatatgacattattgcacagttcatgatcgggtatc |
141 |
Q |
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| T |
55707466 |
aagcaataggagtttaaaattttaacatgagcgtttcctgtg---------ttgcagcaaccgggatatgacattgtagcacagttagtgattggatatc |
55707556 |
T |
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| Q |
142 |
tccttcctggaaaaccaattgcaaacttgctctttaagatttatgggagaatcagcaccgtccatgcactctctttcttgcaagatctcaaacttgggca |
241 |
Q |
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| T |
55707557 |
tccttcctggaaatccaatagcaaacttgctcttccagatttatgggagaatcaacactgtccacacgctctctttcttgtcagatctcaaacttaggca |
55707656 |
T |
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| Q |
242 |
ctacatgaaaattc |
255 |
Q |
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| T |
55707657 |
ctacatgaaaattc |
55707670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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