View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19175_low_76 (Length: 334)

Name: NF19175_low_76
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19175_low_76
NF19175_low_76
[»] chr8 (5 HSPs)
chr8 (154-249)||(26981034-26981130)
chr8 (155-249)||(26083903-26083998)
chr8 (155-244)||(5334273-5334363)
chr8 (155-212)||(42932716-42932773)
chr8 (153-185)||(7496756-7496788)
[»] chr7 (4 HSPs)
chr7 (155-249)||(20077317-20077412)
chr7 (155-249)||(4407779-4407872)
chr7 (162-243)||(30061499-30061581)
chr7 (251-279)||(4407898-4407926)
[»] chr4 (7 HSPs)
chr4 (154-249)||(10427623-10427718)
chr4 (155-249)||(9199750-9199845)
chr4 (247-293)||(10426886-10426932)
chr4 (155-216)||(9199512-9199573)
chr4 (198-249)||(9201332-9201384)
chr4 (155-216)||(12094864-12094925)
chr4 (155-216)||(24257703-24257764)
[»] chr6 (3 HSPs)
chr6 (154-246)||(31442516-31442609)
chr6 (155-241)||(20915980-20916067)
chr6 (155-224)||(7867948-7868018)
[»] chr5 (2 HSPs)
chr5 (155-244)||(6697935-6698025)
chr5 (192-249)||(9045160-9045218)
[»] chr3 (4 HSPs)
chr3 (180-249)||(11582599-11582669)
chr3 (152-208)||(2241513-2241569)
chr3 (153-231)||(39484801-39484881)
chr3 (154-224)||(15291460-15291530)
[»] chr2 (3 HSPs)
chr2 (155-226)||(38996518-38996590)
chr2 (154-226)||(22625385-22625458)
chr2 (155-224)||(28125536-28125606)


Alignment Details
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 26981034 - 26981130
Alignment:
Q  154 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctccttag 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||||||||    
T  26981034 tatctttcttactaaagcttgtttgatcaagcaatatcataccctaattttaacctaatatttttcctccatcatccaagcattaaattctccttag 26981130  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 26083903 - 26083998
Alignment:
Q  155 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctccttag 249  Q
    ||||||||||||||||||| | || |||||||||||||||||||||||||||| ||||| ||||||||||||||| ||| |||||||||| |||||    
T  26083903 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattttccctccatcatcaaagcattaaattcttcttag 26083998  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 5334273 - 5334363
Alignment:
Q  155 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctc 244  Q
    |||||||||| ||||  || | ||||||| ||||||||||||||||||||||| ||| | ||||||||||||||||||| |||||||||||    
T  5334273 atctttcttattaaaaattatctgatcaaacaatatcataccctaattttaacctaagattttccctccatcatccaagcattaaattctc 5334363  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 42932716 - 42932773
Alignment:
Q  155 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaat 212  Q
    ||||||||||||||||||| | |||||||||||||||||| |||||||||||| ||||    
T  42932716 atctttcttactaaagcttgtctgatcaagcaatatcatatcctaattttaacctaat 42932773  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 7496756 - 7496788
Alignment:
Q  153 ttatctttcttactaaagcttctttgatcaagc 185  Q
    ||||||||||||||||||||| |||||||||||    
T  7496756 ttatctttcttactaaagcttgtttgatcaagc 7496788  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 20077412 - 20077317
Alignment:
Q  155 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctccttag 249  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||    
T  20077412 atctttcttactaaagcttgtttggtcaagcaatatcataccctaattttaacctaatattttccctccatcatccaagcattaaattcaccttag 20077317  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 4407779 - 4407872
Alignment:
Q  155 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctccttag 249  Q
    ||||||||||||||||| |||  | |||||||||||||||||||||||||||| ||||| ||||||||||||| ||||  ||||||||||||||||    
T  4407779 atctttcttactaaagcgtct--ggtcaagcaatatcataccctaattttaacctaatattttccctccatcacccaaacattaaattctccttag 4407872  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 30061499 - 30061581
Alignment:
Q  162 ttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattct 243  Q
    |||||||||||| | ||||||||| || |||||||||||||| | | ||||| |||||||||||  | |||||||| ||||||    
T  30061499 ttactaaagcttgtctgatcaagctatctcataccctaatttaaccctaatattttccctccattgtacaagtatttaattct 30061581  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 279
Target Start/End: Original strand, 4407898 - 4407926
Alignment:
Q  251 ttcattgctaccttcttaacatgtgactt 279  Q
    |||||||||||||||||||||||||||||    
T  4407898 ttcattgctaccttcttaacatgtgactt 4407926  T

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Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 10427718 - 10427623
Alignment:
Q  154 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatatttccctccatcatccaagtattaaattctccttag 249  Q
    ||||||| ||| ||||| || |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||    
T  10427718 tatcttttttattaaaggttgtttggtcaagcaatatcataccctaattttaacctaatatttccctccatcatccaagcattaaattcttcttag 10427623  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 9199750 - 9199845
Alignment:
Q  155 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatattt-ccctccatcatccaagtattaaattctccttag 249  Q
    ||||||||||||||||||| | || ||||||||||||||| || | | ||||| |||||||| |||||||||||||||| ||||||||||||||||    
T  9199750 atctttcttactaaagcttgtctggtcaagcaatatcatatcccactattaacctaatattttccctccatcatccaagcattaaattctccttag 9199845  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 247 - 293
Target Start/End: Complemental strand, 10426932 - 10426886
Alignment:
Q  247 taggttcattgctaccttcttaacatgtgacttgatgcactaatctt 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  10426932 taggttcattgctaccttcttaacatgtgacttgatgcactaatctt 10426886  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 9199512 - 9199573
Alignment:
Q  155 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatattt 216  Q
    ||||||||||||||||||| | || |||||||||||||||||||||||||||| ||||||||    
T  9199512 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattt 9199573  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 9201332 - 9201384
Alignment:
Q  198 taattttaacttaatattt-ccctccatcatccaagtattaaattctccttag 249  Q
    |||||||||| |||||||| ||| |||||||||||| ||||||||||||||||    
T  9201332 taattttaacctaatattttcccaccatcatccaagcattaaattctccttag 9201384  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 12094925 - 12094864
Alignment:
Q  155 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatattt 216  Q
    ||||||||||||||||||| |||| |||||| ||   | |||||||||||||| ||||||||    
T  12094925 atctttcttactaaagcttgtttggtcaagctattagaaaccctaattttaacctaatattt 12094864  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 24257703 - 24257764
Alignment:
Q  155 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatattt 216  Q
    ||||||||||||||||||| |||| |||||||||     |||||||||||||| ||||||||    
T  24257703 atctttcttactaaagcttgtttggtcaagcaattgttcaccctaattttaacctaatattt 24257764  T

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Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 154 - 246
Target Start/End: Original strand, 31442516 - 31442609
Alignment:
Q  154 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctcct 246  Q
    |||||||||||||||||||| |||| |||||||||  ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||    
T  31442516 tatctttcttactaaagcttgtttggtcaagcaatcacataccctaattttaacctaatattttccctccatcatccaagcattaaattctcct 31442609  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 20916067 - 20915980
Alignment:
Q  155 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaatt 241  Q
    ||||||||||||||||||| | |||||||||||||| ||||| |||||||||| ||||| ||||||||||||||||||| ||||||||    
T  20916067 atctttcttactaaagcttgtctgatcaagcaatatgataccttaattttaacctaatattttccctccatcatccaagcattaaatt 20915980  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 7868018 - 7867948
Alignment:
Q  155 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccat 224  Q
    ||||||||||||||||||| | || |||||| || |||||||||||||| | | ||||| |||||||||||    
T  7868018 atctttcttactaaagcttatctggtcaagctatctcataccctaatttaaccctaatattttccctccat 7867948  T

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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 6697935 - 6698025
Alignment:
Q  155 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctc 244  Q
    ||||||||||||||| ||| | || ||||||||| ||||||| |||||||||| ||||| |||||||||||||| |||| |||||||||||    
T  6697935 atctttcttactaaaacttgtctggtcaagcaatctcataccttaattttaacctaatattttccctccatcatgcaagcattaaattctc 6698025  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 9045160 - 9045218
Alignment:
Q  192 ataccctaattttaacttaatattt-ccctccatcatccaagtattaaattctccttag 249  Q
    |||||||||||||||| |||||||| |||||||||||| ||  ||||||||||||||||    
T  9045160 ataccctaattttaacctaatattttccctccatcatcaaaacattaaattctccttag 9045218  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 11582599 - 11582669
Alignment:
Q  180 tcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctccttag 249  Q
    |||||||||||||||||||||||||||| ||||| ||||||||| ||||||||  |||||||||| |||||    
T  11582599 tcaagcaatatcataccctaattttaacctaatattttccctccgtcatccaaacattaaattcttcttag 11582669  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 2241569 - 2241513
Alignment:
Q  152 cttatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaact 208  Q
    ||||| |||||||||||||||| |||  ||||||||| ||||||| |||||||||||    
T  2241569 cttatttttcttactaaagcttgtttcgtcaagcaatttcataccttaattttaact 2241513  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 39484881 - 39484801
Alignment:
Q  153 ttatctttcttactaaagcttctttgatcaagcaatatcat-accctaattttaacttaata-tttccctccatcatccaa 231  Q
    ||||||||||||||||||||| |||| |||||| ||||  | |||||| ||||||| ||||| ||||||||||||| ||||    
T  39484881 ttatctttcttactaaagcttgtttggtcaagctatatgttcaccctagttttaacctaatattttccctccatcacccaa 39484801  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 15291460 - 15291530
Alignment:
Q  154 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatatttccctccat 224  Q
    |||||||||||||||||||| |||| |||||| ||    ||||||||| ||||| |||| |||||||||||    
T  15291460 tatctttcttactaaagcttgtttggtcaagctattgtttaccctaatcttaacctaatttttccctccat 15291530  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 38996590 - 38996518
Alignment:
Q  155 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatca 226  Q
    ||||||||||||||||||| | ||||||||| ||||  ||||||||||||||| ||||| |||||||||||||    
T  38996590 atctttcttactaaagcttgtctgatcaagctatatgttaccctaattttaacctaatattttccctccatca 38996518  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 22625458 - 22625385
Alignment:
Q  154 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatca 226  Q
    |||||||||||||||| ||| | || |||||||||   |||||||||||||||| ||||| |||||||||||||    
T  22625458 tatctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatca 22625385  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 28125536 - 28125606
Alignment:
Q  155 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccat 224  Q
    ||||||||||||||||||| | || |||||| || |||||||||||||| | | ||||| |||||||||||    
T  28125536 atctttcttactaaagcttgtctggtcaagctatctcataccctaatttaaccctaatattttccctccat 28125606  T

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