View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_77 (Length: 330)
Name: NF19175_low_77
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_77 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 7021774 - 7021461
Alignment:
| Q |
1 |
gatcatgtatacaaagcttcaaacaatttaaatatttattagaatatagttgatcgtatacaaaacttcaaacagtttagatggttgttggtatatgttt |
100 |
Q |
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| T |
7021774 |
gatcatgtatacaaagcttcaaacaatttaaatatttattggaatatagttgatcgcatacaaaacttcaaacagtttagatggttgttggtatatgttt |
7021675 |
T |
|
| Q |
101 |
acatatgttttaaatagcatattgtacgttaaaataagatgatggaataaaatatcatatagtttttgaaattctattaatatatatagatttgatctac |
200 |
Q |
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| T |
7021674 |
acatatgttttaaatagcatattgtacgttaaaataagatgatggaataaaatatcatatagtttttgaaattctattaatatatatagatttgatctac |
7021575 |
T |
|
| Q |
201 |
ttaacgaaaactttcaattgttgtttaattttccgtttacaaagagtcattagaagtgaatggggaaggtctcaatcctgttgctattctagtatttgat |
300 |
Q |
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| T |
7021574 |
ttaacgaaaactttcaattgttgtttaattttccgtttacaaagagtcattagaagtgaatggggaaggtctcaatcctgttgctattctagtatttgat |
7021475 |
T |
|
| Q |
301 |
gaaatgaagtgtaa |
314 |
Q |
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| T |
7021474 |
gaaatgaagtgtaa |
7021461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 12391099 - 12391030
Alignment:
| Q |
98 |
tttacatatgttttaaatagcatattgtacgttaaaataagatgatggaataaaatatcatatagttttt |
167 |
Q |
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| T |
12391099 |
tttacatatgttataactagtgtattgtatgttaaaataagatgatgtgattaaatatcatatagttttt |
12391030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 12407216 - 12407147
Alignment:
| Q |
98 |
tttacatatgttttaaatagcatattgtacgttaaaataagatgatggaataaaatatcatatagttttt |
167 |
Q |
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| T |
12407216 |
tttacatatgttataactagtgtattgtatgttaaaataagatgatgtgattaaatatcatatagttttt |
12407147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 49645323 - 49645279
Alignment:
| Q |
98 |
tttacatatgttttaaatagcatattgtacgttaaaataagatga |
142 |
Q |
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|||| |||||||||||||||| |||| | |||||||||||||||| |
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| T |
49645323 |
tttatatatgttttaaatagcttattattcgttaaaataagatga |
49645279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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