View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19175_low_78 (Length: 330)

Name: NF19175_low_78
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19175_low_78
NF19175_low_78
[»] chr1 (3 HSPs)
chr1 (18-159)||(47511200-47511341)
chr1 (205-285)||(47510487-47510567)
chr1 (205-277)||(47512240-47512312)
[»] chr3 (3 HSPs)
chr3 (18-159)||(41741094-41741235)
chr3 (205-284)||(41741293-41741372)
chr3 (205-279)||(41740399-41740473)
[»] chr7 (3 HSPs)
chr7 (205-281)||(1271091-1271167)
chr7 (213-284)||(35380612-35380683)
chr7 (205-277)||(35379308-35379380)
[»] chr2 (3 HSPs)
chr2 (205-284)||(26030133-26030212)
chr2 (205-279)||(26026113-26026187)
chr2 (15-80)||(26029964-26030029)
[»] chr8 (2 HSPs)
chr8 (239-279)||(15883809-15883849)
chr8 (279-315)||(26141964-26142000)
[»] chr4 (1 HSPs)
chr4 (240-284)||(39095880-39095924)


Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 47511200 - 47511341
Alignment:
Q  18 aggtgaacaatcatagtaattgagatattgtgaccaccattttcttaggttgagagtggagactggagacctaaagaagggaagttgaagaatcgtgtgt 117  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47511200 aggtgagcaatcatagaaattgagatattgtgaccaccattttcttaggttgagagtggagaccggagacctaaagaagggaagttgaagaatcgtgtgt 47511299  T
Q  118 tggagtatcaaaattccgcccaaattgtttcagagtgtagaa 159  Q
    |||||||||||||| |||||||||||||||||||| ||||||    
T  47511300 tggagtatcaaaatcccgcccaaattgtttcagagcgtagaa 47511341  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 205 - 285
Target Start/End: Complemental strand, 47510567 - 47510487
Alignment:
Q  205 ccaccatttgattgatccaatggctaggaatagatgaaggagagagatggagagaattctgaaggagaggatccgtttcca 285  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  47510567 ccaccatttgattgatccaatggctaggaatggatgaagcagagagatggagagaattctgaaggagaggatccgattcca 47510487  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 205 - 277
Target Start/End: Original strand, 47512240 - 47512312
Alignment:
Q  205 ccaccatttgattgatccaatggctaggaatagatgaaggagagagatggagagaattctgaaggagaggatc 277  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47512240 ccaccattttattgatccaatggctaggaatagatgaaggagagagatggagagaattctgaaggagaggatc 47512312  T

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Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 41741094 - 41741235
Alignment:
Q  18 aggtgaacaatcatagtaattgagatattgtgaccaccattttcttaggttgagagtggagactggagacctaaagaagggaagttgaagaatcgtgtgt 117  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41741094 aggtgagcaatcatagaaattgagatattgtgaccaccattttcttaggttgagagtggagactggagacctaaagaagggaagttgaagaattgtgtgt 41741193  T
Q  118 tggagtatcaaaattccgcccaaattgtttcagagtgtagaa 159  Q
    |||| ||||||||| || ||||||||||||||||||||||||    
T  41741194 tggattatcaaaatcccacccaaattgtttcagagtgtagaa 41741235  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 41741293 - 41741372
Alignment:
Q  205 ccaccatttgattgatccaatggctaggaatagatgaaggagagagatggagagaattctgaaggagaggatccgtttcc 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41741293 ccaccatttgattgatccaatggctaggaatagatgaaggagagagatggagagaattctgaaggagaggatccgattcc 41741372  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 41740473 - 41740399
Alignment:
Q  205 ccaccatttgattgatccaatggctaggaatagatgaaggagagagatggagagaattctgaaggagaggatccg 279  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  41740473 ccaccatttgattgatccaatggctaggaatggatgaaggagagagatggagagaattttgaaggagaggatccg 41740399  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 1271167 - 1271091
Alignment:
Q  205 ccaccatttgattgatccaatggctaggaatagatgaaggagagagatggagagaattctgaaggagaggatccgtt 281  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  1271167 ccaccatttgattgatccagtggctaggaataaatgaaggagagagatggagagaattccgaaggagaggatccgtt 1271091  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 35380612 - 35380683
Alignment:
Q  213 tgattgatccaatggctaggaatagatgaaggagagagatggagagaattctgaaggagaggatccgtttcc 284  Q
    ||||||||||||||||||| |||   ||||||| |||||| |||||||||||||||||||||||||| ||||    
T  35380612 tgattgatccaatggctagaaattagtgaaggaaagagattgagagaattctgaaggagaggatccgattcc 35380683  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 277
Target Start/End: Complemental strand, 35379380 - 35379308
Alignment:
Q  205 ccaccatttgattgatccaatggctaggaatagatgaaggagagagatggagagaattctgaaggagaggatc 277  Q
    ||||||| ||||||||| |||||| |  |||   ||||||||||||||||| |||||| ||||||||||||||    
T  35379380 ccaccatctgattgatctaatggccaaaaattagtgaaggagagagatggaaagaattttgaaggagaggatc 35379308  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 26030133 - 26030212
Alignment:
Q  205 ccaccatttgattgatccaatggctaggaatagatgaaggagagagatggagagaattctgaaggagaggatccgtttcc 284  Q
    ||||||| |||||||||||||||| || |||   ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  26030133 ccaccatctgattgatccaatggccagaaattagtgaaggagagagatggagataattctgaaggagaggatccgattcc 26030212  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 26026187 - 26026113
Alignment:
Q  205 ccaccatttgattgatccaatggctaggaatagatgaaggagagagatggagagaattctgaaggagaggatccg 279  Q
    ||||||| |||||||||||||||| |  |||   |||||||||||||||||||||||||||||||||||||||||    
T  26026187 ccaccatctgattgatccaatggccaaaaattagtgaaggagagagatggagagaattctgaaggagaggatccg 26026113  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 26029964 - 26030029
Alignment:
Q  15 cataggtgaacaatcatagtaattgagatattgtgaccaccattttcttaggttgagagtggagac 80  Q
    |||||||||  ||||| || ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  26029964 cataggtgagtaatcacagaaattgagatatggtgaccaccattttcttagattgagagtggagac 26030029  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 15883849 - 15883809
Alignment:
Q  239 tgaaggagagagatggagagaattctgaaggagaggatccg 279  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15883849 tgaaggagagagatggagagaattctgaaggagaggatccg 15883809  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 26141964 - 26142000
Alignment:
Q  279 gtttccagtgattcaaattccgatgaatgttgacggt 315  Q
    |||||||||||||||||||||||||||||||||||||    
T  26141964 gtttccagtgattcaaattccgatgaatgttgacggt 26142000  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 39095924 - 39095880
Alignment:
Q  240 gaaggagagagatggagagaattctgaaggagaggatccgtttcc 284  Q
    |||||||||||| ||||| |||| |||||||||||||||| ||||    
T  39095924 gaaggagagagaaggagacaattttgaaggagaggatccgattcc 39095880  T

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