View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_79 (Length: 326)
Name: NF19175_low_79
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_79 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 40940801 - 40940499
Alignment:
| Q |
18 |
agtcctgtccatgacattctccatttcagagtaagtatgcgtacgcagaactttatcctgcattttctcaatttcttttttctttagtttcaaacgttct |
117 |
Q |
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| T |
40940801 |
agtcctgtccatgacattctccatttcagcgtaagta------cggagaactttatcttgcattttctcaatctcttttttctttagtttcaaaagttct |
40940708 |
T |
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| Q |
118 |
tccttctcagctatgagcttaatcaaatcatccctggatagacctgattcactatctgaatctgaatcagagaaagaagttcgtttaatactcctcctcc |
217 |
Q |
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| T |
40940707 |
tccttctcagctacaagcttaatcaaatcatccctggatagatccgattcactatctgaatctgaatcagaaaaagcagttcgtttaatactcctcctcc |
40940608 |
T |
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| Q |
218 |
ttcttttgacagtttgagaatgagaatctgctgaaatagaacctgattcttctgtttgatctgcagacttggcttgtccaggctgatcaatttcctttgc |
317 |
Q |
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| T |
40940607 |
tccttttgacagtttgagaatgtgaatctgctgaaatagaacctgattcttctgtttgatctgcagacttggcttgtccaggctgatcaatttcctctgc |
40940508 |
T |
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| Q |
318 |
ttctccact |
326 |
Q |
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|||| |||| |
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| T |
40940507 |
ttcttcact |
40940499 |
T |
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