View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19175_low_8 (Length: 642)

Name: NF19175_low_8
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19175_low_8
NF19175_low_8
[»] chr5 (11 HSPs)
chr5 (24-631)||(15807444-15808053)
chr5 (292-477)||(41859542-41859727)
chr5 (292-488)||(42629498-42629694)
chr5 (295-488)||(9575310-9575503)
chr5 (291-452)||(42840417-42840578)
chr5 (371-471)||(1040119-1040219)
chr5 (292-347)||(42637359-42637414)
chr5 (379-485)||(42637224-42637330)
chr5 (292-349)||(40545121-40545178)
chr5 (293-353)||(40549282-40549342)
chr5 (293-353)||(42413999-42414059)
[»] chr8 (2 HSPs)
chr8 (295-552)||(3367655-3367912)
chr8 (552-624)||(3367529-3367598)
[»] chr2 (3 HSPs)
chr2 (19-270)||(25287071-25287321)
chr2 (404-485)||(16921102-16921183)
chr2 (292-353)||(44937800-44937861)
[»] chr7 (2 HSPs)
chr7 (292-552)||(45866864-45867124)
chr7 (292-345)||(42446349-42446402)
[»] chr1 (1 HSPs)
chr1 (22-144)||(17204368-17204497)
[»] scaffold0129 (2 HSPs)
scaffold0129 (292-347)||(10487-10542)
scaffold0129 (292-386)||(33521-33615)
[»] chr6 (1 HSPs)
chr6 (292-387)||(29131320-29131415)
[»] chr3 (2 HSPs)
chr3 (292-347)||(5162456-5162511)
chr3 (552-616)||(53691512-53691573)


Alignment Details
Target: chr5 (Bit Score: 486; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 24 - 631
Target Start/End: Complemental strand, 15808053 - 15807444
Alignment:
Q  24 tcctgtttctattgggatttttaaggag-tttggtcaggatgcta-ggtagttataatttatgtcttcnnnnnnnaactttttgatttgttgtggt-ggt 120  Q
    ||||| ||||||||||||  |||||||| |||| ||||||||||| |||||||||| ||||||||||        ||||||  ||||||||||||| |||    
T  15808053 tcctggttctattgggatgcttaaggaggtttgatcaggatgctaaggtagttatattttatgtcttattttttgaacttta-gatttgttgtggttggt 15807955  T
Q  121 tgatgtatgtgttaatggattttatgtgaaaatcgattttcggtgaaggattgaattgtgttattgttgtttaaggcgataggattagagtcatgtaata 220  Q
    ||||| |||||  |||||||||||||||||||| |||||| ||||||||||||| |||||| ||||||||| ||||| ||||||||| ||||||||||||    
T  15807954 tgatgcatgtgaaaatggattttatgtgaaaattgatttttggtgaaggattgagttgtgtgattgttgttgaaggcaataggattatagtcatgtaata 15807855  T
Q  221 aaattaaactgaagaaatatataggtagtagtagttgatatttatcaaaaattaaactgaagaaatcaaaatttcacatatcaattttgggtgaagttgg 320  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807854 aaattaaactgaagaaatatataggtagtagtagttgatgtttatcaaaaattaaactgaagaaatcaaaatttcacatatcaattttgggtgaagttgg 15807755  T
Q  321 gttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaatttgtaagaagggcgatatattcttcagaaaa 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807754 gttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaatttgtaagaagggcgatatattcttcagaaaa 15807655  T
Q  421 aaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtgactcatgttgccggataatgatttataaggaaa 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807654 aaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtgactcatgttgccggataatgatttataaggaaa 15807555  T
Q  521 gccttctaccgcttgaaagaaaaaacaattagttttattttactttctgctttgtgagcatcataatgttatggcaatacaccattactgatattggcta 620  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807554 gccttctaccgcttgaaagaaaaaacaattagttttattttactttctgctttgtgagcatcataatgttatggcaatacaccattactgatattggcta 15807455  T
Q  621 tctgtgctcct 631  Q
    |||||||||||    
T  15807454 tctgtgctcct 15807444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 292 - 477
Target Start/End: Complemental strand, 41859727 - 41859542
Alignment:
Q  292 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaattt 391  Q
    ||||| |||||| |||| |||||||||||| | ||||||||||||| |||||||||  |||||||||| ||| | |   || | | |||||||||| ||     
T  41859727 tttcatatatcagttttaggtgaagttgggattaaagagtcatggatcaaactcttcgttgtaggtccgttgtccgatgttaagcgtcctattggagttg 41859628  T
Q  392 gtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggt 477  Q
    ||||||| || ||||| || ||| | ||||||||||||||  |||||| |||| ||||||||||||||||||| ||||| ||||||    
T  41859627 gtaagaaaggagatatgtttttccggaaaaaggataatgaactagttttgtttaatttaagcacccagagaattgaagaccttggt 41859542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 292 - 488
Target Start/End: Complemental strand, 42629694 - 42629498
Alignment:
Q  292 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaattt 391  Q
    ||||| |||||||||||||||||||| ||  | || |||||||||| |||||| |||||||| ||||| ||| |  |  |||| |||||||||||| ||     
T  42629694 tttcatatatcaattttgggtgaagtcggagtgaaggagtcatggatcaaactttttattgtgggtccgttgacctgtgttgagcatcctattggagttg 42629595  T
Q  392 gtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtga 488  Q
    |||| || || ||||||| ||| | ||||||||||||  |  ||||||| ||| |||||| |||||| | ||| |||||||||||||| ||||||||    
T  42629594 gtaaaaatggtgatatatacttgaaaaaaaaggataacaaactagtttgttttaatttaatcacccaaaaaattgaagagcttggtgtcaaaggtga 42629498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 295 - 488
Target Start/End: Complemental strand, 9575503 - 9575310
Alignment:
Q  295 cacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaatttgta 394  Q
    ||||||||| |||||| | |||||||  | || |||||||||||||||||||| || |||| ||| |||       || | |||||||| ||| || |||    
T  9575503 cacatatcagttttggataaagttggaatgaaggagtcatggaccaaactcttcatcgtagatccgttgttctatgttaagcatcctataggagttggta 9575404  T
Q  395 agaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtga 488  Q
    | ||||| || |||||||| ||||||||||||||| | |||| | ||||| |||||| |||||||| ||| | |||||||||||||||||||||    
T  9575403 aaaagggtgacatattctttagaaaaaaggataatcaattagctaggtttaatttaatcacccagaaaattgtagagcttggtgttaaaggtga 9575310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 452
Target Start/End: Complemental strand, 42840578 - 42840417
Alignment:
Q  291 atttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaatt 390  Q
    ||||||||| ||||||||||||||| ||||  | ||||| |||||||| ||| |||||||||| ||||| || ||| || ||||  |||| ||||||       
T  42840578 atttcacatttcaattttgggtgaacttggtgtaaaagaatcatggactaaagtctttattgttggtcccttaccttgccttgagtatccaattggagca 42840479  T
Q  391 tgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaag 452  Q
     | ||||||||| |||||||  | | |||||| || |||||  ||| |||||||||||||||    
T  42840478 gggaagaagggcaatatattgattataaaaaaagacaatgaactagcttggtttgatttaag 42840417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 371 - 471
Target Start/End: Complemental strand, 1040219 - 1040119
Alignment:
Q  371 ttgaacatcctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaaga 470  Q
    |||| |||||||||||| |  |||||||||  ||||||||||| |||||||| ||  |||| |||||||||||| | |||||||| || ||||| |||||    
T  1040219 ttgagcatcctattggagtcggtaagaaggaagatatattctttagaaaaaacgacgatgaattagtttggtttaacttaagcactcaaagaattgaaga 1040120  T
Q  471 g 471  Q
    |    
T  1040119 g 1040119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 42637414 - 42637359
Alignment:
Q  292 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctt 347  Q
    |||||||||||||||||||||||||| ||| | || || |||||||||||||||||    
T  42637414 tttcacatatcaattttgggtgaagtcggggtgaaggaatcatggaccaaactctt 42637359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 379 - 485
Target Start/End: Complemental strand, 42637330 - 42637224
Alignment:
Q  379 cctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtg 478  Q
    ||||||||| |  ||||||| || ||||||||||| |||||||| ||| ||||  ||||||| ||| ||||||| || || |||||| || |  ||||||    
T  42637330 cctattggagtgagtaagaatggtgatatattctttagaaaaaacgatgatgaactagtttgctttaatttaagtacacaaagaatccaacaatttggtg 42637231  T
Q  479 ttaaagg 485  Q
    |||||||    
T  42637230 ttaaagg 42637224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 40545121 - 40545178
Alignment:
Q  292 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactcttta 349  Q
    |||||||||||||||||||||||||||||  | || || ||||||| |||||| ||||    
T  40545121 tttcacatatcaattttgggtgaagttggtgtgaaggaatcatggatcaaacttttta 40545178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 40549282 - 40549342
Alignment:
Q  293 ttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgt 353  Q
    ||||||||||||||||||||||||| ||  | || || ||||||| |||||||||| ||||    
T  40549282 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgt 40549342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 42413999 - 42414059
Alignment:
Q  293 ttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgt 353  Q
    ||||||| ||||||||||| ||| ||||  | || ||||||||||| ||||||||||||||    
T  42413999 ttcacatttcaattttgggcgaatttggtgtaaaggagtcatggactaaactctttattgt 42414059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 3e-93; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 295 - 552
Target Start/End: Complemental strand, 3367912 - 3367655
Alignment:
Q  295 cacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaatttgta 394  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||| ||| | |    
T  3367912 cacatatcaattttaggtgaagttggggtcaaagagtcatggaccaaactctttattgtaggtcctatgcgtgacattgaacatcctattggtattggca 3367813  T
Q  395 agaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtgactcatg 494  Q
    |||||||||||||||||||||||||||| |||||||||  | |||| ||  ||||||||||| ||||||| |||||||||||||||||||||| ||  ||    
T  3367812 agaagggcgatatattcttcagaaaaaaagataatgagcaaatttgtttaaatttaagcacctagagaattgaagagcttggtgttaaaggtggcttgtg 3367713  T
Q  495 ttgccggataatgatttataaggaaagccttctaccgcttgaaagaaaaaacaattag 552  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3367712 ttgccggataatgatttataaggaaagccttctgccgcttgaaagaaaaaacaattag 3367655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 552 - 624
Target Start/End: Complemental strand, 3367598 - 3367529
Alignment:
Q  552 gttttattttactttctgctttgtgagcatcataatgttatggcaatacaccattactgatattggctatctg 624  Q
    ||||||||||| ||| | ||||||||||||   |||| |||||||||||| ||||||||||||||| ||||||    
T  3367598 gttttattttagtttttactttgtgagcat---aatgatatggcaatacatcattactgatattggttatctg 3367529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 173; Significance: 1e-92; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 25287321 - 25287071
Alignment:
Q  19 tgaggtcctgtttctattgggatttttaaggagtttggtcaggatgcta-ggtagttataatttatgtcttcnnnnnnnaactttttgatttgttgtggt 117  Q
    |||||||||| ||||||||||||||||||| ||    ||  |||||||| ||||||||||||||||||||||       |||||||||||||||||||||    
T  25287321 tgaggtcctggttctattgggatttttaagaagga--gttgggatgctaaggtagttataatttatgtcttctttttttaactttttgatttgttgtggt 25287224  T
Q  118 ggttgatgtatgtgttaatggattttatgtgaaaatcgattttcggtgaaggattgaattgtgttattgttgtttaaggcgataggattagagtcatgta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25287223 ggttgatgtatgtgttaatggattttatgtgaaaatcgattttcgctgaaggattgaattgtgttattgttgtttaaggcaataggattagagtcatgta 25287124  T
Q  218 ataaaattaaactgaagaaatatataggtagtagtagttgatatttatcaaaa 270  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  25287123 ataaaattaaactgaagaaatatataggcggtagtagttgatatttatcaaaa 25287071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 404 - 485
Target Start/End: Original strand, 16921102 - 16921183
Alignment:
Q  404 atatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaagg 485  Q
    ||||||||||||||||| | ||||||||  |||| ||||||||||| |  ||||| |  || ||||||||||||||||||||    
T  16921102 atatattcttcagaaaagatgataatgaaatagtctggtttgatttgaatacccaaatgattgaagagcttggtgttaaagg 16921183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 44937861 - 44937800
Alignment:
Q  292 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgt 353  Q
    |||||||||||||||||||||||| | ||  | ||||| |||||||| ||||||||| ||||    
T  44937861 tttcacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactctttgttgt 44937800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 292 - 552
Target Start/End: Original strand, 45866864 - 45867124
Alignment:
Q  292 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaattt 391  Q
    ||||||||||||||||| |||||| ||||  | || |||||||||| |||||| |||||||| ||| ||||| || |  | || ||||||||| |||||     
T  45866864 tttcacatatcaattttaggtgaaattggagtgaaggagtcatggatcaaactttttattgtgggttctttgtcttgtgtcgaccatcctattagaattg 45866963  T
Q  392 gtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtgactc 491  Q
    |||||| ||| ||||||||||| |||||| | ||| ||||  ||||||  ||| |||||||||| |||| ||| ||||||||||||||||||||| | ||    
T  45866964 gtaagacgggtgatatattctttagaaaagaagatgatgaactagtttcatttaatttaagcacacagaaaattgaagagcttggtgttaaaggttattc 45867063  T
Q  492 atgttgccggataatgatttataaggaaagccttctaccgcttgaaagaaaaaacaattag 552  Q
    |  ||||| ||||||  ||||||||||||||||||||||| |||  ||||  |||||||||    
T  45867064 actttgccagataatagtttataaggaaagccttctaccgattgccagaatcaacaattag 45867124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 345
Target Start/End: Original strand, 42446349 - 42446402
Alignment:
Q  292 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactc 345  Q
    |||||||||||||||||||||||| |||   |||| || |||||||||||||||    
T  42446349 tttcacatatcaattttgggtgaacttgctatcaaggaatcatggaccaaactc 42446402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 17204368 - 17204497
Alignment:
Q  22 ggtcctgtttctattgggattttt---aaggagtttggtcaggatgct-aggtagttataatt--tatgtcttcnnnnnnnaactttttgatttgttgtg 115  Q
    ||||||| ||||||||||||||||   ||||||||||||||||||||| |||||||||| |||  ||||||||        ||||| |||||||||||||    
T  17204368 ggtcctggttctattgggatttttaagaaggagtttggtcaggatgctaaggtagttatgatttgtatgtcttagttttggaacttgttgatttgttgtg 17204467  T
Q  116 g-tggttgatgtatgtgttaatggatttta 144  Q
    | |||||||||||||||  |||||||||||    
T  17204468 gttggttgatgtatgtggaaatggatttta 17204497  T

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Target: scaffold0129 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 10487 - 10542
Alignment:
Q  292 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctt 347  Q
    |||||||||||||||||||||||||||||  | || ||||| ||||| ||||||||    
T  10487 tttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactctt 10542  T

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Target: scaffold0129; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 292 - 386
Target Start/End: Complemental strand, 33615 - 33521
Alignment:
Q  292 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattgg 386  Q
    |||||||| || |||||||||||| ||||  | || ||||| ||||| |||||||||||| | || ||||| ||| |||| || |||||||||||    
T  33615 tttcacatttctattttgggtgaacttggtgtgaaggagtcttggactaaactctttattattgggcctttaccttgcatcgagcatcctattgg 33521  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 387
Target Start/End: Original strand, 29131320 - 29131415
Alignment:
Q  292 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattgga 387  Q
    |||||||||||||||||||||||| ||||  | ||||| || ||||||||  |||| ||||| || || ||| ||||| |||| | ||||||||||    
T  29131320 tttcacatatcaattttgggtgaatttggcataaaagaatcgtggaccaagatcttcattgttggaccattgtctggcgttgagcgtcctattgga 29131415  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 5162456 - 5162511
Alignment:
Q  292 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctt 347  Q
    |||||||||||||||||||||||||||||  | || || ||||||| |||||||||    
T  5162456 tttcacatatcaattttgggtgaagttggtgtgaaggaatcatggatcaaactctt 5162511  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 552 - 616
Target Start/End: Original strand, 53691512 - 53691573
Alignment:
Q  552 gttttattttactttctgctttgtgagcatcataatgttatggcaatacaccattactgatattg 616  Q
    ||||||||||| ||||| ||||||||||||   | || ||| |||||||||||||||||||||||    
T  53691512 gttttattttagtttctactttgtgagcat---attggtattgcaatacaccattactgatattg 53691573  T

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