View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_85 (Length: 301)
Name: NF19175_low_85
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_85 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 301
Target Start/End: Complemental strand, 33141304 - 33141017
Alignment:
| Q |
14 |
ataatactgacagagatgatttcacactcaaatgaccatgagcaagactaagaagaaaatgcaataattaaacataggacacatagtttaccgatgccaa |
113 |
Q |
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| T |
33141304 |
ataaaactgacaaagatgatctcacactcaaatgaccataaagaagaccaagaagaaaatgcaataattaaacataggacatatagtttgccgatgccaa |
33141205 |
T |
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| Q |
114 |
agaccggtgaagctagctaatgctcaccattggccttatccccattatggcaacacttgtagctaataaacacttccattgtgcggtgacaatctggaca |
213 |
Q |
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| T |
33141204 |
agaccagtgaagctagctaatgttcagcattaaccttatcgccattatggcaacacttgtagctaataaacacttccattgtgcggtgacaatctggaca |
33141105 |
T |
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| Q |
214 |
ctcgataaaatctggaatttttccagcaacattaggaatctcaaggtgagagcaaatatgaacggtactagcaaccttgtgatgatgt |
301 |
Q |
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| T |
33141104 |
ctcgataaaatctggaattttcccagcaacattaggaatctcaaggtgagagcaaatatgaacggtactagcaaccttgtgatgatgt |
33141017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 155 - 287
Target Start/End: Complemental strand, 33159783 - 33159651
Alignment:
| Q |
155 |
ccattatggcaacacttgtagctaataaacacttccattgtgcggtgacaatctggacactcgataaaatctggaatttttccagcaacattaggaatct |
254 |
Q |
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| T |
33159783 |
ccattatggcagcacttgtagctgatatacacttccattgtgcggtgacaatctggacacttaataaagtctgggatttttccatcaacattaggaatct |
33159684 |
T |
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| Q |
255 |
caaggtgagagcaaatatgaacggtactagcaa |
287 |
Q |
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| T |
33159683 |
caaggtgagagcaaatatgaacagaactagcaa |
33159651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 155 - 287
Target Start/End: Complemental strand, 33182627 - 33182495
Alignment:
| Q |
155 |
ccattatggcaacacttgtagctaataaacacttccattgtgcggtgacaatctggacactcgataaaatctggaatttttccagcaacattaggaatct |
254 |
Q |
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| T |
33182627 |
ccattatggcagcacttgtagctgatatacacttccattgtgcggtgacaatctggacacttaataaagtctgggatttttccatcaacattaggaatct |
33182528 |
T |
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| Q |
255 |
caaggtgagagcaaatatgaacggtactagcaa |
287 |
Q |
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| T |
33182527 |
caaggtgagagcaaatatgaacagaactagcaa |
33182495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 148 - 301
Target Start/End: Original strand, 33286936 - 33287089
Alignment:
| Q |
148 |
cttatccccattatggcaacacttgtagctaataaacacttccattgtgcggtgacaatctggacactcgataaaatctggaatttttccagcaacatta |
247 |
Q |
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||||||| ||| |||||||||||||||| ||||||||||||||||| |||| |||||||||||||||| | ||||||||| |||||||||||||| ||| |
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| T |
33286936 |
cttatcctcatcatggcaacacttgtaggtaataaacacttccattctgcgacgacaatctggacactcaacaaaatctgggatttttccagcaacttta |
33287035 |
T |
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| Q |
248 |
ggaatctcaaggtgagagcaaatatgaacggtactagcaaccttgtgatgatgt |
301 |
Q |
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| T |
33287036 |
tgaatctcaaggtgagagcaaagatgaaaggaaggagcaaccttcttatgatgt |
33287089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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