View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_86 (Length: 301)
Name: NF19175_low_86
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_86 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 114 - 297
Target Start/End: Original strand, 56229430 - 56229613
Alignment:
| Q |
114 |
ataggaaacttgaaagttaatccttgcattgtaaattgtaatgcagtcatgagaaagcaaaagaagcaatgatatattcatacacaaagaatatcaatgg |
213 |
Q |
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| T |
56229430 |
ataggaaacttgaaagttaatccttgcattgtaaattgtaatgcagtcatgagaaagcaaaagaagcaatgatatattcatacacaaagaatatcaatgg |
56229529 |
T |
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| Q |
214 |
ctttgctgctttcctggaagagaaagaagctgctgacattgcaggtaaccttcaaaataactgatgatatgaatggaagaatat |
297 |
Q |
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| T |
56229530 |
ctttgctgctttcctggaagagaaagaagctgctgacattgcaggtaaccttcaaaataactgatgatatgaatggaagaatat |
56229613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 56229323 - 56229357
Alignment:
| Q |
7 |
aagaatatgatgggataaaatttcaacggaacatc |
41 |
Q |
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| T |
56229323 |
aagaaaatgatgggataaaatttcaacggaacatc |
56229357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 148 - 272
Target Start/End: Original strand, 39186126 - 39186250
Alignment:
| Q |
148 |
attgtaatgcagtcatgagaaagcaaaagaagcaatgatatattcatacacaaagaatatcaatggctttgctgctttcctggaagagaaagaagctgct |
247 |
Q |
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| T |
39186126 |
attgtaattcagccatgagaaagcaaaagaggcaatgatatattcatacacaaagaatatcaatggatttgctgctctcttggaagagaaagaagctgct |
39186225 |
T |
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| Q |
248 |
gacattgcaggtaaccttcaaaata |
272 |
Q |
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| T |
39186226 |
gatattgcaggtaaccttcaaaata |
39186250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 31197124 - 31197216
Alignment:
| Q |
164 |
gagaaagcaaaagaagcaatgatatattcatacacaaagaatatcaatggctttgctgctttcctggaagagaaagaagctgctgacattgca |
256 |
Q |
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| T |
31197124 |
gagaaagcaaaagaagcaatcatttattcatataacaaacacatcaatggctttgctgctctacttgaagatgaagaagctgcagatattgca |
31197216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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