View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_89 (Length: 290)
Name: NF19175_low_89
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_89 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 1616584 - 1616318
Alignment:
| Q |
1 |
acaaaaatgttgacaaacgcttgttttacgttactcatattagnnnnnnnngagaggtacttatacttaatttgttgtattttataagtattttgaggcc |
100 |
Q |
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| T |
1616584 |
acaaaaatgttgacaaacgcttgttttacgttactcatattagttttttt-gagaggtacttatactta-----ttgtattttataagtattttgaggcc |
1616491 |
T |
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| Q |
101 |
aaatcttaaaaat--atgtattaagttccctnnnnnnnnnnnnn-ttatgcatcaagtaaagtttggtgcattaattcttatcaatcaaatcccttgtat |
197 |
Q |
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| T |
1616490 |
aaatcttaaaaatttatgtattaagttccctaaaaaataaaataattatgcatcaagtaaagtttggtgcattaattcttatcaatcaaatcccttgtat |
1616391 |
T |
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| Q |
198 |
aaggggagatttctaaaattcggcacttctttctttttctgaaaaggaattttttaattaagcattaagtaat |
270 |
Q |
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| T |
1616390 |
aaggggagatttctaaaattcggcacttctttctttttctgaaaaggaattttttaattaagcattaagtaat |
1616318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 152 - 252
Target Start/End: Original strand, 40050472 - 40050572
Alignment:
| Q |
152 |
aagtaaagtttggtgcattaattcttatcaatcaaatcccttgtataaggggagatttctaaaattcggcacttctttctttttctgaaaaggaattttt |
251 |
Q |
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| T |
40050472 |
aagtaaattttgatgcattgattcttctcaatcaaatcccttgtataacgggagatttctaaaattcggtttttatttctttttctgaaaaggaattttt |
40050571 |
T |
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| Q |
252 |
t |
252 |
Q |
| |
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| T |
40050572 |
t |
40050572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 40050421 - 40050475
Alignment:
| Q |
72 |
ttgttgtattttataagtattttgaggccaaatcttaaaaa--tatgtattaagt |
124 |
Q |
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| T |
40050421 |
ttgttgtattttataagtattttgagaccaaatcttaaaaatctatgtattaagt |
40050475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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