View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_9 (Length: 632)
Name: NF19175_low_9
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 26632215 - 26632531
Alignment:
| Q |
18 |
catatttgctcttgaaagaagacatgttagtggcttttgagatgagagaagaaaaagaatagtttcttttgttttgttgtgtgtgatgtttggaaagtag |
117 |
Q |
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| T |
26632215 |
catatttgctcttgaaagaagacatgttagtggcttttgagatgagagaagaaaaagaatagtttgttttgttttgttgtg--tgatgtttggaaagtag |
26632312 |
T |
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| Q |
118 |
agaagacaagtaagaagaggtgtttgagttttgaagatttataaaggtgtagtttgaatatttaatattaaagaaatgagaaagtaaaaaacaatgggca |
217 |
Q |
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| T |
26632313 |
agaagacaagtaagaagaggtgtttgagttttgaagatttataaaggtgtagtttgaatatttaatattaaagaaatgagaaagtaaaaaacaatgggca |
26632412 |
T |
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| Q |
218 |
aatatagattctagatgtgtttgaatgttgaagttgaatttaagaccgcaaaataagttcaacctttgcatctgtctcaaattaacaccccacacgaggt |
317 |
Q |
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| T |
26632413 |
aatatagattctagatgtgtttgaatgttgaagttgaatttaagaccgcaaaataagttcaaccgttgcatctgtctcaaattaacaccccacacgaggt |
26632512 |
T |
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| Q |
318 |
tcctctttccacttaccaa |
336 |
Q |
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| T |
26632513 |
tcctctttccacttaccaa |
26632531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 392 - 618
Target Start/End: Original strand, 26632587 - 26632813
Alignment:
| Q |
392 |
attctcatgatataggaataaactttggattcgcattattttctaaaaagaaatcattgattaataatggtgactaagctacacctattaatgatggtga |
491 |
Q |
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| T |
26632587 |
attctcatgatataggaataaactttggattcgcattattttctaaaaagaaatcattgattaataatggtgactaagctacacctattaatgatggtga |
26632686 |
T |
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| Q |
492 |
aagagagaggagagtgagagaaggatggggtgannnnnnnnnnnnnnnnnnnnnnnnaaaaagttagggacgtcaaaataattattaaattgcaaatagg |
591 |
Q |
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| T |
26632687 |
aagagagaggagagtgagagaaggatggggtgatttttttgattttttttactttttaaaaagttagggacgtcaaaataattattaaattgcaaatagg |
26632786 |
T |
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| Q |
592 |
aagttactctcaagtgagtgatctgtg |
618 |
Q |
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| T |
26632787 |
aagttactctcaagtgagtgatctgtg |
26632813 |
T |
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