View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19175_low_90 (Length: 289)
Name: NF19175_low_90
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_90 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 24 - 266
Target Start/End: Complemental strand, 13041535 - 13041293
Alignment:
| Q |
24 |
tcttccaattccaagtgaagatagagtttggagaagataatttagaaccttagaaataacttcaggccctctacaacgacccaactcctcactgttcttc |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13041535 |
tcttccaattccaagtgaagatagagtttggagaagataatttagaaccttagaaataacttcaggccctctacaacgacccaactcctcactgttcttc |
13041436 |
T |
|
| Q |
124 |
ggatattgaatagctgtggatataattcgaaatattggagcagcaagagatgtagtcgccactgacacagaaaaattcccttgatgtggttcaagagtat |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13041435 |
ggatattgaatagctgtggatataattcgaaatattggagcagcaagagatgtagtcgccactgacacagaaaaattcccttgatgtggttcaagagtat |
13041336 |
T |
|
| Q |
224 |
cctcttgtatattacttattgctaagggaagcaaagacaatgg |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13041335 |
cctcttgtatattacttattgctaagggaagcaaagacaatgg |
13041293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 35 - 263
Target Start/End: Original strand, 28376600 - 28376828
Alignment:
| Q |
35 |
caagtgaagatagagtttggagaagataatttagaaccttagaaataacttcaggccctctacaacgacccaactcctcactgttcttcggatattgaat |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||| | || || || | ||| ||||||||||| | |||| ||||| ||| ||||| | |||| |||||| |
|
|
| T |
28376600 |
caagtgaagatagagtttggagaagataattcaaaatttttgacagaacctcaggccctctgccacgagataactcttcattgttccttggatgttgaat |
28376699 |
T |
|
| Q |
135 |
agctgtggatataattcgaaatattggagcagcaagagatgtagtcgccactgacacagaaaaattcccttgatgtggttcaagagtatcctcttgtata |
234 |
Q |
| |
|
||| |||||||||||| ||||||||| || ||||||||||| || || || | ||| ||||||||||| ||||||| ||||| || || | |||| |
|
|
| T |
28376700 |
agcaatggatataattctaaatattggggccgcaagagatgtggtagctgaagaaagagataaattcccttgcagtggttccagagtgtcttcgtctata |
28376799 |
T |
|
| Q |
235 |
ttacttattgctaagggaagcaaagacaa |
263 |
Q |
| |
|
|| ||||||| | ||||||||||||||| |
|
|
| T |
28376800 |
ttgcttattgtcacgggaagcaaagacaa |
28376828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University