View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_93 (Length: 281)
Name: NF19175_low_93
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_93 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 51181573 - 51181310
Alignment:
| Q |
1 |
ccctcttatcaagctcctgtaaagctgatgagcgaaaatttgcacaaaatattaatgaaaatagttacagattgagcagttatctgattataattgatga |
100 |
Q |
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| T |
51181573 |
ccctcttatcaagctcctgtaaagctgatgagcgaaaatttgcacaaaatattaatgaaaatagttacagattgagcagttatctgattataattgatga |
51181474 |
T |
|
| Q |
101 |
atataatcacaagttgaatggaagataccccatttctcagcaagttttgattggaaaggaattctggagaaagtgcttggtgaagtaaaaataattcctg |
200 |
Q |
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| T |
51181473 |
atataatcacaagttgaatggaagataccccatttctcagcaagttttgattggaaaggaattctggagaaagtgcttggtgaagtaaaaataattcctg |
51181374 |
T |
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| Q |
201 |
catatgaacgattactatgttatttcatttatatatactaaagatttaattgctgtgcgaaatt |
264 |
Q |
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| T |
51181373 |
catatgaacgattactatgttatttcatttatatatactaaagatttaattgctgtgcgaaatt |
51181310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 14181094 - 14181355
Alignment:
| Q |
1 |
ccctcttatcaagctcctgtaaagctgatgagcgaaaatttgcacaaaatattaatgaaaatagttacagattgagcagttatctgattataattgatga |
100 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14181094 |
ccctcttattaagctcctgtaaagctgatgagcaaaaatttgcacaaaaaattaacgaaaatagttacagattgagcatttatctgattataattgatga |
14181193 |
T |
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| Q |
101 |
atataatcacaagttgaatggaagataccccatttctcagcaagttttgattggaaaggaattctggagaaagtgcttggtgaagtaaaaataattcctg |
200 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14181194 |
atataatcacatgttgaatgcaagataccccatttctcagcaagttttggctggaaaggaattctggagaaagtgcttggtgaagtaaaaataaatcctg |
14181293 |
T |
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| Q |
201 |
catatgaacgattactatgttatttcatttatatatactaaagatttaattgctgtgcgaaatt |
264 |
Q |
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|||||||| |||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||| |
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| T |
14181294 |
catatgaatgattac--tgttatttcatttatatataccaaagatttaatcgctgtgcaaaatt |
14181355 |
T |
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