View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_98 (Length: 273)
Name: NF19175_low_98
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_98 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 35206035 - 35205807
Alignment:
| Q |
19 |
ttcctacactaattaagaacttcaaaaaggagaatcgagnnnnnnnnn--cttctataagcaatcatgtacaaacgtagattcaacacaaaaccattgta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35206035 |
ttcctacactaattaagaacttcaaaaaggagaatcaaatttttttttttcttctataagcaatcatgtacaaacgtagattcaacacaaaaccattgta |
35205936 |
T |
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| Q |
117 |
tgttgctgaccgagaagagcctgagcctgagctcaagctcgagcccatctcggaagatggtcctgcttctccctcttcttgtgaagacacaaaaattgaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35205935 |
tgttgctgaccgagaagagcctgagcctgagctcaagctcgagcccatcttggaagatggtcctgcttctccctcttcttgtgaagacacaaaaattgaa |
35205836 |
T |
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| Q |
217 |
gaatcatcacccaagaaaaggtatgagcc |
245 |
Q |
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|||||||| |||||||||||||||||||| |
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| T |
35205835 |
gaatcatcgcccaagaaaaggtatgagcc |
35205807 |
T |
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