View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19176_high_17 (Length: 340)
Name: NF19176_high_17
Description: NF19176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19176_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 45 - 254
Target Start/End: Original strand, 12196808 - 12197017
Alignment:
| Q |
45 |
tcatcaccagttacctgacagtcttctaaacttcttggaatttgtctgtttctttgtggtctggctatagtggttgactcttcatctaagatttcttctt |
144 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
12196808 |
tcatcaccagttacctgacagtcttctgaacttcttggaatttgtctgtttctttgtggtctggctatagtggttgactcttcatctatgatttcttcat |
12196907 |
T |
|
| Q |
145 |
cattagcaacttcatttatggtgagctcatcagattctctattatcttcaatgataacctgcttctcagagacactgcacttgtttgcagtacaatccca |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
12196908 |
cattagcaacttcatttatggtgagctcatcagattctctattatcttcaatgataacctccttctcagagacactgcacttatttgcagtacaatccca |
12197007 |
T |
|
| Q |
245 |
atattcatct |
254 |
Q |
| |
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|||||||||| |
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| T |
12197008 |
atattcatct |
12197017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 20 - 328
Target Start/End: Complemental strand, 33684286 - 33683978
Alignment:
| Q |
20 |
caattcaccatcactacctacttcttcatcaccagttacctgacagtcttctaaacttcttggaatttgtctgtttctttgtggtctggctatagtggtt |
119 |
Q |
| |
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||||||||||| | ||||||||| |||||||||| ||| ||||| || | || || |||| |||||| ||||||||| ||||||||||||||||||| |
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| T |
33684286 |
caattcaccattagaacctacttcatcatcaccagatacttgacaatcctgcaatctcattgggatttgtttgtttctttatggtctggctatagtggtt |
33684187 |
T |
|
| Q |
120 |
gactcttcatctaagatttcttcttcattagcaacttcatttatggtgagctcatcagattctctattatcttcaatgataacctgcttctcagagacac |
219 |
Q |
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| ||| |||||||| |||| ||||| | |||| ||||||| ||||| |||||||||| |||| ||||||||||||||||||| ||||||||||| |||| |
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| T |
33684186 |
ggctcctcatctaatatttattctttaatagcttcttcattgatggtaagctcatcagtttctttattatcttcaatgataacttgcttctcagacacac |
33684087 |
T |
|
| Q |
220 |
tgcacttgtttgcagtacaatcccaatattcatcttctaagactttcacatacctactgatagcaattttcttagattgtggatcaagcaatctatatgc |
319 |
Q |
| |
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|||| | |||| | | |||||||||||||| || ||||| || ||||||| ||||| || |||||||||||||| |||| ||||| |||||||||||| |
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| T |
33684086 |
tgcattcatttgaattccaatcccaatattcttcctctaaaacattcacatctctactaattgcaattttcttagagtgtgaatcaaacaatctatatgc |
33683987 |
T |
|
| Q |
320 |
tctagtatt |
328 |
Q |
| |
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|| |||||| |
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| T |
33683986 |
tccagtatt |
33683978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 20 - 328
Target Start/End: Complemental strand, 33701340 - 33701032
Alignment:
| Q |
20 |
caattcaccatcactacctacttcttcatcaccagttacctgacagtcttctaaacttcttggaatttgtctgtttctttgtggtctggctatagtggtt |
119 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||| ||| ||||| || | || || |||| |||||| ||||||||| ||||||||||||||||||| |
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| T |
33701340 |
caattcaccattagaacctacttcatcatcaccagatacttgacaatcctgcaatctcattgggatttgtttgtttctttatggtctggctatagtggtt |
33701241 |
T |
|
| Q |
120 |
gactcttcatctaagatttcttcttcattagcaacttcatttatggtgagctcatcagattctctattatcttcaatgataacctgcttctcagagacac |
219 |
Q |
| |
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| ||| |||||||| |||| ||||| | |||| ||||||| ||||| |||||||||| |||| ||||||||||||||||||| ||||||||||| |||| |
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|
| T |
33701240 |
ggctcctcatctaatatttattctttaatagcttcttcattgatggtaagctcatcagtttctttattatcttcaatgataacttgcttctcagacacac |
33701141 |
T |
|
| Q |
220 |
tgcacttgtttgcagtacaatcccaatattcatcttctaagactttcacatacctactgatagcaattttcttagattgtggatcaagcaatctatatgc |
319 |
Q |
| |
|
|||| | |||| | | |||||||||||||| || ||||| || ||||||| ||||| || |||||||||||||| |||| ||||| |||||||||||| |
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| T |
33701140 |
tgcattcatttgaattccaatcccaatattcttcctctaaaacattcacatctctactaattgcaattttcttagagtgtgaatcaaacaatctatatgc |
33701041 |
T |
|
| Q |
320 |
tctagtatt |
328 |
Q |
| |
|
|| |||||| |
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|
| T |
33701040 |
tccagtatt |
33701032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 321
Target Start/End: Complemental strand, 14639564 - 14639327
Alignment:
| Q |
84 |
atttgtctgtttctttgtggtctggctatagtggttgactcttcatctaagatttcttcttcattagcaacttcatttatggtgagctcatcagattctc |
183 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||| ||| |||| | | | ||||| | || | |||||||| || ||||||||||| || |
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| T |
14639564 |
atttgtttgtttctttgtggtctggctatagttgttggctcctcatatgatacctcttcagaaataacttcttcatttgtgagaagctcatcagactcct |
14639465 |
T |
|
| Q |
184 |
tattatcttcaatgataacctgcttctcagagacactgcacttgtttgcagtacaatcccaatattcatcttctaagactttcacatacctactgatagc |
283 |
Q |
| |
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| |||| |||||||||||| | || ||| | |||||||| | |||| | | |||||||| ||||| || ||||| |||||||||| ||| | || | |
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| T |
14639464 |
tcttattttcaatgataacatttttttcatacacactgcattcatttgaattccaatcccagtattcttcctctaacactttcacatctctaattattga |
14639365 |
T |
|
| Q |
284 |
aattttcttagattgtggatcaagcaatctatatgctc |
321 |
Q |
| |
|
||| |||||||| ||| |||||||||||||||| |||| |
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| T |
14639364 |
aatcttcttagagtgtagatcaagcaatctataagctc |
14639327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 6372785 - 6372849
Alignment:
| Q |
20 |
caattcaccatcactacctacttcttcatcaccagttacctgacagtcttctaaacttcttggaa |
84 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| |||||||| ||| ||||| || || ||||||| |
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|
| T |
6372785 |
caattcaccatcactgcctacttcatcatcactagttacctaacaatcttccaatctccttggaa |
6372849 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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