View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19176_high_2 (Length: 616)
Name: NF19176_high_2
Description: NF19176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19176_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 12 - 602
Target Start/End: Original strand, 3416085 - 3416683
Alignment:
| Q |
12 |
aattctagacatgtgcttttacatggttgt---agatgaacgattggtgatgaaattataataaaagtgatggctgatacatgggtgtaatctc---aaa |
105 |
Q |
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| T |
3416085 |
aattctagacatgtgcttttacatggttgttgtagatgaacgattggtgatgaaattataataaaagtgatggctgatacatgggtgtaatctcctcaaa |
3416184 |
T |
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| Q |
106 |
accaaagtgtatatgatgttggatggagagagaatatgtgatactaataaaattcattatttgtttcttgatgagagattgtagaagtattctagatcgt |
205 |
Q |
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| T |
3416185 |
accaaagtgtatatgatgttggatggagagagaatatgtgatactaataaaattcattatttgtttcttgatgagagattgtagaagtattctagatcgt |
3416284 |
T |
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| Q |
206 |
gcctctttttgagtcagaaagagttgataagctaaattatgttgaagatcaaattgagtgttatgtagttaagcttgaatacaatagaatgacgagggat |
305 |
Q |
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| T |
3416285 |
gcctctttttgagtcagaaagagttgataagctaaattatgttgaagatcaaattgattgttatgtagttaagcttgaatacaatagaatgacgagggat |
3416384 |
T |
|
| Q |
306 |
attttgtgtagtgatagatttcacgtcttcatgagaccagaaaagtgtatggcaaatccaagctccatgaagtagtaagaaaaaatggttgtggaataat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3416385 |
attttgtgtagtgatagatttcacgtcttcatgagaccagaaaagtgtatggcaaatccaagctccatgaagtagtaagaaaaaatggttgtggaataat |
3416484 |
T |
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| Q |
406 |
agttacttgtcagcaaagcaatatatatggcgagcaatttatataccaaagaagtctacttatttcttgttcctcaaatgtttctaaattgaatatttca |
505 |
Q |
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| T |
3416485 |
agttacttgtcagcaaagcaatatatatggcaagcaatttatataccaaagaagtctacttatttcttgttcctcaaatgtttctaaattgaatatttca |
3416584 |
T |
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| Q |
506 |
gtttctagtattgttgctggttttctttacattctaattttgaagtcaag--nnnnnnnnnaaggagacaaacaaatatgattgagttaatatgtaatt |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
3416585 |
gtttctagtattgttgctggttttctttacattctaattttgaagtcaagtttttttttttaaggagacaaacaaatatgattgagtaaatatgtaatt |
3416683 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 46889168 - 46889120
Alignment:
| Q |
12 |
aattctagacatgtgcttttacatggttgtagatgaacgattggtgatg |
60 |
Q |
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| T |
46889168 |
aattctagacatgtgttttcacatgcttgtagatggaggattggtgatg |
46889120 |
T |
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