View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19176_high_22 (Length: 270)

Name: NF19176_high_22
Description: NF19176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19176_high_22
NF19176_high_22
[»] chr1 (2 HSPs)
chr1 (2-252)||(9798515-9798765)
chr1 (169-251)||(49642865-49642947)
[»] chr8 (1 HSPs)
chr8 (169-251)||(15191335-15191417)
[»] scaffold0164 (2 HSPs)
scaffold0164 (169-251)||(18557-18639)
scaffold0164 (169-251)||(28937-29019)
[»] chr3 (5 HSPs)
chr3 (169-251)||(53976353-53976435)
chr3 (169-233)||(31196947-31197011)
chr3 (169-233)||(52771302-52771366)
chr3 (2-45)||(31196563-31196606)
chr3 (2-45)||(52771707-52771750)
[»] scaffold0014 (2 HSPs)
scaffold0014 (169-233)||(97591-97655)
scaffold0014 (2-45)||(97207-97250)
[»] scaffold0013 (2 HSPs)
scaffold0013 (169-233)||(250708-250772)
scaffold0013 (5-45)||(250327-250367)
[»] chr4 (3 HSPs)
chr4 (169-233)||(13986262-13986326)
chr4 (2-45)||(13986667-13986710)
chr4 (173-236)||(20245905-20245968)
[»] chr7 (2 HSPs)
chr7 (2-45)||(16255197-16255240)
chr7 (169-233)||(16254792-16254856)
[»] chr6 (3 HSPs)
chr6 (2-45)||(26132117-26132160)
chr6 (169-233)||(26129512-26129576)
chr6 (170-233)||(29155505-29155568)
[»] chr2 (4 HSPs)
chr2 (179-234)||(31187162-31187217)
chr2 (179-234)||(31195222-31195277)
chr2 (179-234)||(31213837-31213892)
chr2 (169-245)||(20044630-20044706)
[»] scaffold0061 (2 HSPs)
scaffold0061 (169-215)||(13861-13907)
scaffold0061 (169-215)||(22919-22965)


Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 2 - 252
Target Start/End: Original strand, 9798515 - 9798765
Alignment:
Q  2 atcttgttgagagtgggtaaagggttcatcaacaaaatttgagatctaagcatgtcaaaggaatcatttaaaccggttaagaacctaattgaacgtgtaa 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9798515 atcttgttgagagtgggtaaagggttcatcaacaaaatttgagatctaagcatgtcaaaggaatcatttaaaccggttaagaacctaattgaacgtgtaa 9798614  T
Q  102 tttcatgttggtgtttagaattactcaaaccagtaacacaaacacaacggtgagggcatgttgcaccgaattcatgatccacgaatgaataagcatgttg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9798615 tttcatgttggtgtttagaattactcaaaccagtaacacaaacacaacggtgagggcatgttgcaccgaattcatgatccacgaatgaataagcatgttg 9798714  T
Q  202 caccgattccaagccttaaaacttggatcaaactctgttggaacagggatt 252  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9798715 cactgattccaagccttaaaacttggatcaaactctgttggaacagggatt 9798765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 49642865 - 49642947
Alignment:
Q  169 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaactctgttggaacagggat 251  Q
    |||||||| ||||| ||||| | |||||||||||| |||||||||||||| ||| |||||||||| || ||||||||||||||    
T  49642865 gaattcataatccaagaatgcacaagcatgttgcaacgattccaagccttgaaatttggatcaaaatccgttggaacagggat 49642947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 15191417 - 15191335
Alignment:
Q  169 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaactctgttggaacagggat 251  Q
    |||||||| ||||| ||||| | |||||||||||| |||||||||||||| ||| |||||||||| |||||||||||||||||    
T  15191417 gaattcataatccaagaatgcacaagcatgttgcaacgattccaagccttgaaatttggatcaaaatctgttggaacagggat 15191335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 18557 - 18639
Alignment:
Q  169 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaactctgttggaacagggat 251  Q
    |||||||| ||||| ||||| | |||||||||||| |||||||||||||| ||| |||||||||| || ||||||||||||||    
T  18557 gaattcataatccaagaatgcacaagcatgttgcaacgattccaagccttgaaatttggatcaaaatcagttggaacagggat 18639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 28937 - 29019
Alignment:
Q  169 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaactctgttggaacagggat 251  Q
    |||||||| ||||| ||||| | |||||||||||| |||||||||||||| ||  |||||||||| || ||||||||||||||    
T  28937 gaattcataatccaagaatgcacaagcatgttgcaacgattccaagccttgaagtttggatcaaaatccgttggaacagggat 29019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 53976435 - 53976353
Alignment:
Q  169 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaactctgttggaacagggat 251  Q
    |||||||| ||||| ||||| | |||||||||||| |||||||||||||| ||| |||||||||| || ||||||||||||||    
T  53976435 gaattcataatccaagaatgcacaagcatgttgcaacgattccaagccttgaaatttggatcaaaatccgttggaacagggat 53976353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 31196947 - 31197011
Alignment:
Q  169 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaa 233  Q
    |||||||||||||| ||||| | |||||||||||| |||||||| || || ||||||||||||||    
T  31196947 gaattcatgatccatgaatgtacaagcatgttgcaacgattccatgctttgaaacttggatcaaa 31197011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 52771366 - 52771302
Alignment:
Q  169 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaa 233  Q
    |||||||||||||| ||||| | |||||||||||| |||||||| || || ||||||||||||||    
T  52771366 gaattcatgatccatgaatgtacaagcatgttgcaacgattccatgctttgaaacttggatcaaa 52771302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 31196563 - 31196606
Alignment:
Q  2 atcttgttgagagtgggtaaagggttcatcaacaaaatttgaga 45  Q
    |||||||||||||| |||||||||||||||||||| ||||||||    
T  31196563 atcttgttgagagttggtaaagggttcatcaacaagatttgaga 31196606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 52771750 - 52771707
Alignment:
Q  2 atcttgttgagagtgggtaaagggttcatcaacaaaatttgaga 45  Q
    |||||||||||||| |||||||||||||||||||| ||||||||    
T  52771750 atcttgttgagagttggtaaagggttcatcaacaagatttgaga 52771707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 97591 - 97655
Alignment:
Q  169 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaa 233  Q
    |||||||||||||| ||||| | |||||||||||| |||||||| || || ||||||||||||||    
T  97591 gaattcatgatccatgaatgtacaagcatgttgcaacgattccatgctttgaaacttggatcaaa 97655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 97207 - 97250
Alignment:
Q  2 atcttgttgagagtgggtaaagggttcatcaacaaaatttgaga 45  Q
    |||||||||||||| |||||||||||||||||||| ||||||||    
T  97207 atcttgttgagagttggtaaagggttcatcaacaagatttgaga 97250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 250708 - 250772
Alignment:
Q  169 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaa 233  Q
    |||||||||||||| ||||| | |||||||||||| |||||||| || || ||||||||||||||    
T  250708 gaattcatgatccatgaatgtacaagcatgttgcaacgattccatgctttgaaacttggatcaaa 250772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 250327 - 250367
Alignment:
Q  5 ttgttgagagtgggtaaagggttcatcaacaaaatttgaga 45  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  250327 ttgttgagagttggtaaagggttcatcaacaagatttgaga 250367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 13986326 - 13986262
Alignment:
Q  169 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaa 233  Q
    |||||||||||||| ||||| | |||||||||||| |||||||| || || ||||||||||||||    
T  13986326 gaattcatgatccatgaatgtacaagcatgttgcaacgattccatgctttgaaacttggatcaaa 13986262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 13986710 - 13986667
Alignment:
Q  2 atcttgttgagagtgggtaaagggttcatcaacaaaatttgaga 45  Q
    |||||||||||||| |||||||||||||||||||| ||||||||    
T  13986710 atcttgttgagagttggtaaagggttcatcaacaagatttgaga 13986667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 20245905 - 20245968
Alignment:
Q  173 tcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaactc 236  Q
    |||| ||||| ||||| ||||||||||||||  ||||||||||||| |||| ||||||||||||    
T  20245905 tcataatccaagaatgcataagcatgttgcaatgattccaagccttgaaacatggatcaaactc 20245968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 16255240 - 16255197
Alignment:
Q  2 atcttgttgagagtgggtaaagggttcatcaacaaaatttgaga 45  Q
    |||||||||||||| |||||||||||||||||||| ||||||||    
T  16255240 atcttgttgagagttggtaaagggttcatcaacaagatttgaga 16255197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 16254856 - 16254792
Alignment:
Q  169 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaa 233  Q
    |||||||||||||| ||||| | ||||||||| || |||||||| || || ||||||||||||||    
T  16254856 gaattcatgatccatgaatgcacaagcatgttacaacgattccatgctttgaaacttggatcaaa 16254792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 26132160 - 26132117
Alignment:
Q  2 atcttgttgagagtgggtaaagggttcatcaacaaaatttgaga 45  Q
    |||||||||||||| |||||||||||||||||||| ||||||||    
T  26132160 atcttgttgagagttggtaaagggttcatcaacaagatttgaga 26132117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 26129576 - 26129512
Alignment:
Q  169 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaa 233  Q
    |||||||||||||| ||||| | ||||||||| || |||||||| || || ||||||||||||||    
T  26129576 gaattcatgatccatgaatgcacaagcatgttacaacgattccatgctttgaaacttggatcaaa 26129512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 29155505 - 29155568
Alignment:
Q  170 aattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaa 233  Q
    ||||||||||||| ||||| | |||||||||||| ||||| || ||||| ||||| ||||||||    
T  29155505 aattcatgatccaagaatgcacaagcatgttgcaacgatttcacgccttgaaactaggatcaaa 29155568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 31187217 - 31187162
Alignment:
Q  179 tccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaac 234  Q
    ||||| |||||| |||||| ||||| |||||||||| ||| |||||||||||||||    
T  31187217 tccacaaatgaacaagcatattgcagcgattccaagacttgaaacttggatcaaac 31187162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 31195277 - 31195222
Alignment:
Q  179 tccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaac 234  Q
    ||||| |||||| |||||| ||||| |||||||||| ||| |||||||||||||||    
T  31195277 tccacaaatgaacaagcatattgcagcgattccaagacttgaaacttggatcaaac 31195222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 31213892 - 31213837
Alignment:
Q  179 tccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaac 234  Q
    ||||| |||||| |||||| ||||| |||||||||| ||| |||||||||||||||    
T  31213892 tccacaaatgaacaagcatattgcagcgattccaagacttgaaacttggatcaaac 31213837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 20044630 - 20044706
Alignment:
Q  169 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaactctgttggaac 245  Q
    |||||||||||||| || || || | ||||||||| || ||||| ||||| ||||| ||||||||||| || |||||    
T  20044630 gaattcatgatccaggagtggattaacatgttgcaacggttccacgccttgaaactaggatcaaactccgtgggaac 20044706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 13861 - 13907
Alignment:
Q  169 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagc 215  Q
    ||||||| |||||| || ||||| |||||||||||||||||||||||    
T  13861 gaattcaagatccatgagtgaatcagcatgttgcaccgattccaagc 13907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 22919 - 22965
Alignment:
Q  169 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagc 215  Q
    ||||||| |||||| || ||||| |||||||||||||||||||||||    
T  22919 gaattcaagatccatgagtgaatcagcatgttgcaccgattccaagc 22965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University