View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19176_high_27 (Length: 256)

Name: NF19176_high_27
Description: NF19176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19176_high_27
NF19176_high_27
[»] chr6 (2 HSPs)
chr6 (57-248)||(12197052-12197243)
chr6 (155-193)||(8317708-8317746)
[»] chr7 (2 HSPs)
chr7 (1-241)||(6372894-6373123)
chr7 (155-193)||(7942287-7942325)
[»] chr3 (3 HSPs)
chr3 (1-236)||(14639082-14639317)
chr3 (155-193)||(43552207-43552245)
chr3 (155-193)||(54169548-54169586)
[»] scaffold0044 (1 HSPs)
scaffold0044 (155-193)||(47069-47107)
[»] chr8 (3 HSPs)
chr8 (155-193)||(199888-199926)
chr8 (155-193)||(314725-314763)
chr8 (155-193)||(30408007-30408045)
[»] chr5 (4 HSPs)
chr5 (155-193)||(7101578-7101616)
chr5 (155-193)||(12021204-12021242)
chr5 (155-193)||(16796584-16796622)
chr5 (155-193)||(37679951-37679989)
[»] chr4 (1 HSPs)
chr4 (155-193)||(44149473-44149511)
[»] chr2 (2 HSPs)
chr2 (155-193)||(8053307-8053345)
chr2 (155-193)||(36672966-36673004)
[»] chr1 (1 HSPs)
chr1 (155-193)||(26313928-26313966)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 57 - 248
Target Start/End: Original strand, 12197052 - 12197243
Alignment:
Q  57 tcagggatatgtttatagcatattgagctaaacaccttcaaatgactgacatatggttttctacctgaccaaacctcttcagacacttgattcttcaatt 156  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12197052 tcagggatatgcttatagcatattgagccaaataccttcaaatgactgacatatggttttctacctgaccaaacctcttcaggcacttgattcttcaatt 12197151  T
Q  157 tcttagtgggacatctatttaagatgtaagctgcagtattccctactttaccccaaaattcaagaggaagcttcttctctatcagtataatc 248  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||    
T  12197152 tcttagtgggacatctatttaagatgtaagctgcaatattccctactttaccccaaaattcatgaggtagcttcttctctatcagcataatc 12197243  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 8317708 - 8317746
Alignment:
Q  155 tttcttagtgggacatctatttaagatgtaagctgcagt 193  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  8317708 tttcttagtgggacatctgtttaagatgtatgctgcagt 8317746  T

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Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 6372894 - 6373123
Alignment:
Q  1 gataaccaactaagatcatagcttcattcttgtcctccaacttctttcttcttgcatcagggatatgtttatagcatattgagctaaacaccttcaaatg 100  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| ||| ||||||| |||||||| ||||| |||||||||    
T  6372894 gataaccaactaagatcataacttcactcttgtcctccaacttctttcttcttgtatcagggacatgcttatagcttattgagccaaacatcttcaaatg 6372993  T
Q  101 actgacatatggttttctacctgaccaaacctcttcagacacttgattcttcaatttcttagtgggacatctatttaagatgtaagctgcagtattccct 200  Q
    |||||   ||||||||||||| ||||||||||||||||  ||||||||||||||||||||           |||||||||| |||||| |||||||| ||    
T  6372994 actgattgatggttttctacccgaccaaacctcttcaggaacttgattcttcaatttctt-----------tatttaagatataagctacagtattcact 6373082  T
Q  201 actttaccccaaaattcaagaggaagcttcttctctatcag 241  Q
     ||| |||||| |||||| |||| ||||| |||||| ||||    
T  6373083 gcttcaccccagaattcatgaggtagctttttctctttcag 6373123  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 7942287 - 7942325
Alignment:
Q  155 tttcttagtgggacatctatttaagatgtaagctgcagt 193  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  7942287 tttcttagtgggacatctgtttaagatgtatgctgcagt 7942325  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 14639317 - 14639082
Alignment:
Q  1 gataaccaactaagatcatagcttcattcttgtcctccaacttctttcttcttgcatcagggatatgtttatagcatattgagctaaacaccttcaaatg 100  Q
    |||| ||||| || |||||||||||| | |||||||| | |||||||||||||| |||||| | ||| |||||| | ||||| | ||| || |||||||     
T  14639317 gatagccaaccaaaatcatagcttcaattttgtcctctagcttctttcttcttgaatcaggaacatgcttatagaagattgaaccaaaaactttcaaatt 14639218  T
Q  101 actgacatatggttttctacctgaccaaacctcttcagacacttgattcttcaatttcttagtgggacatctatttaagatgtaagctgcagtattccct 200  Q
    | |||   | ||||| || | |||||||| |||||||| ||| | || |||||  |||||||| |||||||||||||  || |||| |||||| ||  ||    
T  14639217 aatgattgaaggtttccttcttgaccaaatctcttcaggcaccttatccttcatcttcttagtaggacatctatttagaatataagttgcagtgttgact 14639118  T
Q  201 actttaccccaaaattcaagaggaagcttcttctct 236  Q
     ||  ||||||||||||| |||| | ||| ||||||    
T  14639117 gctgcaccccaaaattcatgaggtatctttttctct 14639082  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 43552245 - 43552207
Alignment:
Q  155 tttcttagtgggacatctatttaagatgtaagctgcagt 193  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  43552245 tttcttagtgggacatctgtttaagatgtatgctgcagt 43552207  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 54169548 - 54169586
Alignment:
Q  155 tttcttagtgggacatctatttaagatgtaagctgcagt 193  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  54169548 tttcttagtgggacatctgtttaagatgtatgctgcagt 54169586  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 47069 - 47107
Alignment:
Q  155 tttcttagtgggacatctatttaagatgtaagctgcagt 193  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  47069 tttcttagtgggacatctgtttaagatgtatgctgcagt 47107  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 199888 - 199926
Alignment:
Q  155 tttcttagtgggacatctatttaagatgtaagctgcagt 193  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  199888 tttcttagtgggacatctgtttaagatgtatgctgcagt 199926  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 314725 - 314763
Alignment:
Q  155 tttcttagtgggacatctatttaagatgtaagctgcagt 193  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  314725 tttcttagtgggacatctgtttaagatgtatgctgcagt 314763  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 30408007 - 30408045
Alignment:
Q  155 tttcttagtgggacatctatttaagatgtaagctgcagt 193  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  30408007 tttcttagtgggacatctgtttaagatgtatgctgcagt 30408045  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 7101578 - 7101616
Alignment:
Q  155 tttcttagtgggacatctatttaagatgtaagctgcagt 193  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  7101578 tttcttagtgggacatctgtttaagatgtatgctgcagt 7101616  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 12021242 - 12021204
Alignment:
Q  155 tttcttagtgggacatctatttaagatgtaagctgcagt 193  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  12021242 tttcttagtgggacatctgtttaagatgtatgctgcagt 12021204  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 16796622 - 16796584
Alignment:
Q  155 tttcttagtgggacatctatttaagatgtaagctgcagt 193  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  16796622 tttcttagtgggacatctgtttaagatgtatgctgcagt 16796584  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 37679989 - 37679951
Alignment:
Q  155 tttcttagtgggacatctatttaagatgtaagctgcagt 193  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  37679989 tttcttagtgggacatctgtttaagatgtatgctgcagt 37679951  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 44149511 - 44149473
Alignment:
Q  155 tttcttagtgggacatctatttaagatgtaagctgcagt 193  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  44149511 tttcttagtgggacatctgtttaagatgtatgctgcagt 44149473  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 8053345 - 8053307
Alignment:
Q  155 tttcttagtgggacatctatttaagatgtaagctgcagt 193  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  8053345 tttcttagtgggacatctgtttaagatgtatgctgcagt 8053307  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 36673004 - 36672966
Alignment:
Q  155 tttcttagtgggacatctatttaagatgtaagctgcagt 193  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  36673004 tttcttagtgggacatctgtttaagatgtatgctgcagt 36672966  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 26313966 - 26313928
Alignment:
Q  155 tttcttagtgggacatctatttaagatgtaagctgcagt 193  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  26313966 tttcttagtgggacatctgtttaagatgtatgctgcagt 26313928  T

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